.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1882_8x705_2004.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 524 patterns found. (out of a total of 705 sites) . 233 sites without polymorphism (33.05%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 8Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 0 sec) [ -6233.3784] [Alpha ][ 1.337069] . ( 1 sec) [ -6233.3784] [Topology ] . ( 1 sec) [ -6202.1031] [Topology ] . ( 2 sec) [ -6199.6839] [Topology ] . ( 3 sec) [ -6199.1480] [Topology ] . ( 4 sec) [ -6198.9865] [Topology ] . ( 5 sec) [ -6198.9339] [Topology ] . ( 5 sec) [ -6198.9156] [Topology ] . Checking for NNIs, optimizing five branches... . ( 14 sec) [ -6196.3146] [Topology ] . ( 14 sec) [ -6193.2251] [Alpha ][ 1.023146] . ( 14 sec) [ -6193.2251] [Topology ] . ( 15 sec) [ -6192.5234] [Topology ] . ( 16 sec) [ -6192.3736] [Topology ] . ( 17 sec) [ -6192.3359] [Topology ] . ( 17 sec) [ -6192.3259] [Topology ] . ( 18 sec) [ -6192.3231] [Topology ] . ( 19 sec) [ -6192.3222] [Topology ] . Checking for NNIs, optimizing five branches... . ( 27 sec) [ -6192.0976] [Alpha ][ 0.957346] . ( 27 sec) [ -6192.0976] [Topology ] . ( 28 sec) [ -6192.0396] [Topology ] . ( 28 sec) [ -6192.0253] [Topology ] . ( 29 sec) [ -6192.0212] [Topology ] . ( 30 sec) [ -6192.0199] [Topology ] . ( 31 sec) [ -6192.0194] [Topology ] . Checking for NNIs, optimizing five branches... . ( 38 sec) [ -6191.9983] [Alpha ][ 0.938624] . ( 38 sec) [ -6191.9983] [Topology ] . ( 39 sec) [ -6191.9921] [Topology ] . ( 40 sec) [ -6191.9904] [Topology ] . ( 41 sec) [ -6191.9899] [Topology ] . Checking for NNIs, optimizing five branches... . ( 49 sec) [ -6191.9879] [Alpha ][ 0.932536] . ( 49 sec) [ -6191.9879] [Topology ] . ( 49 sec) [ -6191.9867] [Topology ] . ( 50 sec) [ -6191.9863] [Topology ] . Checking for NNIs, optimizing five branches... . ( 58 sec) [ -6191.9861] [Alpha ][ 0.930641] . ( 58 sec) [ -6191.9861] [Topology ] . ( 59 sec) [ -6191.9858] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 74 sec) [ -6233.3784] [Alpha ][ 1.337069] . ( 75 sec) [ -6226.4796] [ 936] [depth= 1] . ( 75 sec) [ -6209.3135] [ 932] [depth= 1] . ( 75 sec) [ -6204.7689] [ 932] [depth= 1] . ( 77 sec) [ -6197.4732] [Branch lengths ] . ( 77 sec) [ -6194.2674] [Alpha ][ 1.019336] . ( 81 sec) [ -6192.4801] [Branch lengths ] . ( 81 sec) [ -6192.4801] [Topology ] . ( 81 sec) [ -6192.3515] [Topology ] . ( 82 sec) [ -6192.3157] [Topology ] . ( 83 sec) [ -6192.3034] [Topology ] . ( 84 sec) [ -6192.2991] [Topology ] . ( 85 sec) [ -6192.2976] [Topology ] . ( 85 sec) [ -6192.2970] [Topology ] . ( 86 sec) [ -6192.0823] [Alpha ][ 0.955316] . ( 86 sec) [ -6192.0823] [Topology ] . ( 86 sec) [ -6192.0315] [Topology ] . ( 87 sec) [ -6192.0193] [Topology ] . ( 88 sec) [ -6192.0159] [Topology ] . ( 89 sec) [ -6192.0149] [Topology ] . ( 89 sec) [ -6191.9979] [Alpha ][ 0.938584] . ( 89 sec) [ -6191.9979] [Topology ] . ( 90 sec) [ -6191.9919] [Topology ] . ( 90 sec) [ -6191.9903] [Topology ] . ( 91 sec) [ -6191.9898] [Topology ] . ( 91 sec) [ -6191.9877] [Alpha ][ 0.932488] . ( 91 sec) [ -6191.9877] [Topology ] . ( 92 sec) [ -6191.9866] [Topology ] . ( 93 sec) [ -6191.9863] [Topology ] . ( 93 sec) [ -6191.9861] [Alpha ][ 0.930603] . ( 93 sec) [ -6191.9861] [Topology ] . ( 94 sec) [ -6191.9858] [Topology ] . ( 94 sec) [ -6191.9858] [Alpha ][ 0.929672] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -6191.985837 . Log likelihood obtained after SPR moves : -6191.985792 . Log likelihood of the current tree: -6191.985792. . Printing the most likely tree in file 'proteic_M1882_8x705_2004.phy_phyml_tree.txt'... . Time used 0h1m42s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 101.47user 0.00system 1:42.23elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps