.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2636_20x1275_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 775 patterns found. (out of a total of 1275 sites) . 495 sites without polymorphism (38.82%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 35Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -19286.6097] [Alpha ][ 0.500960] . ( 1 sec) [ -19286.6097] [Topology ] . ( 4 sec) [ -19142.1897] [Topology ] . ( 6 sec) [ -19106.5853] [Topology ] . ( 9 sec) [ -19091.7092] [Topology ] . ( 12 sec) [ -19073.4036] [Topology ] . ( 15 sec) [ -19070.3500] [Topology ] . ( 18 sec) [ -19069.3404] [Topology ] . ( 21 sec) [ -19068.8612] [Topology ] . ( 24 sec) [ -19068.6158] [Topology ] . ( 26 sec) [ -19068.4866] [Topology ] . Checking for NNIs, optimizing five branches... . ( 56 sec) [ -19066.8279] [Alpha ][ 0.460393] . ( 56 sec) [ -19066.8279] [Topology ] . ( 59 sec) [ -19066.7881] [Topology ] . ( 62 sec) [ -19066.7777] [Topology ] . ( 65 sec) [ -19066.7723] [Topology ] . ( 68 sec) [ -19066.7693] [Topology ] . ( 71 sec) [ -19066.7676] [Topology ] . ( 73 sec) [ -19066.7666] [Topology ] . Checking for NNIs, optimizing five branches... . ( 99 sec) [ -19066.7666] [Alpha ][ 0.460393] . ( 100 sec) [ -19066.7666] [Topology ] . ( 103 sec) [ -19066.7661] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 155 sec) [ -19286.6097] [Alpha ][ 0.500960] . ( 155 sec) [ -19264.9501] [ 2961] [depth= 3] . ( 156 sec) [ -19245.5435] [ 2957] [depth= 1] . ( 157 sec) [ -19229.4626] [ 2949] [depth= 2] . ( 157 sec) [ -19226.1529] [ 2951] [depth= 1] . ( 158 sec) [ -19225.7052] [ 2954] [depth= 1] . ( 159 sec) [ -19222.7629] [ 2955] [depth= 1] . ( 160 sec) [ -19219.7154] [ 2955] [depth= 1] . ( 161 sec) [ -19216.8399] [ 2957] [depth= 1] . ( 161 sec) [ -19201.6074] [ 2955] [depth= 1] . ( 162 sec) [ -19179.5748] [ 2957] [depth= 1] . ( 167 sec) [ -19176.7644] [ 2968] [depth= 1] . ( 168 sec) [ -19175.9925] [ 2972] [depth= 1] . ( 168 sec) [ -19163.4504] [ 2968] [depth= 1] . ( 170 sec) [ -19152.6440] [ 2957] [depth= 1] . ( 172 sec) [ -19151.7799] [ 2961] [depth= 1] . ( 172 sec) [ -19136.9597] [ 2957] [depth= 1] . ( 177 sec) [ -19083.3318] [Branch lengths ] . ( 177 sec) [ -19081.4762] [Alpha ][ 0.456360] . ( 179 sec) [ -19078.6047] [ 2950] [depth= 1] . ( 182 sec) [ -19078.2784] [ 2952] [depth= 1] . ( 202 sec) [ -19067.9645] [Branch lengths ] . ( 203 sec) [ -19067.9611] [Alpha ][ 0.458159] . ( 228 sec) [ -19066.9681] [Branch lengths ] . ( 228 sec) [ -19066.9681] [Topology ] . ( 231 sec) [ -19066.8616] [Topology ] . ( 234 sec) [ -19066.8205] [Topology ] . ( 237 sec) [ -19066.7984] [Topology ] . ( 240 sec) [ -19066.7862] [Topology ] . ( 243 sec) [ -19066.7793] [Topology ] . ( 246 sec) [ -19066.7755] [Topology ] . ( 246 sec) [ -19066.7713] [Alpha ][ 0.460143] . ( 246 sec) [ -19066.7713] [Topology ] . ( 249 sec) [ -19066.7687] [Topology ] . ( 252 sec) [ -19066.7672] [Topology ] . ( 255 sec) [ -19066.7664] [Topology ] . ( 255 sec) [ -19066.7664] [Alpha ][ 0.460143] . ( 256 sec) [ -19066.7664] [Topology ] . ( 258 sec) [ -19066.7660] [Topology ] . ( 259 sec) [ -19066.7660] [Alpha ][ 0.460143] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -19066.766054 . Log likelihood obtained after SPR moves : -19066.765986 . Log likelihood of the current tree: -19066.765986. . Printing the most likely tree in file 'proteic_M2636_20x1275_2006.phy_phyml_tree.txt'... . Time used 0h4m46s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 283.85user 0.00system 4:46.71elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps