Sequence filename : /auto/dufayard/res/bigdatasets_2.4.5_nucl/nucleic_M3703_1566x915_2008.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Large distance encountered between tax192 and tax1 sequences . Large distance encountered between tax198 and tax1 sequences . Large distance encountered between tax386 and tax1 sequences . Large distance encountered between tax387 and tax1 sequences . Large distance encountered between tax409 and tax1 sequences . Large distance encountered between tax466 and tax1 sequences . Large distance encountered between tax467 and tax1 sequences . Large distance encountered between tax468 and tax1 sequences . Large distance encountered between tax1043 and tax1 sequences . Large distance encountered between tax1089 and tax1 sequences . Large distance encountered between tax1096 and tax1 sequences . Large distance encountered between tax1106 and tax1 sequences . Large distance encountered between tax1108 and tax1 sequences . Large distance encountered between tax1110 and tax1 sequences . Large distance encountered between tax1117 and tax1 sequences . Large distance encountered between tax1209 and tax1 sequences . Large distance encountered between tax1225 and tax1 sequences . Large distance encountered between tax1357 and tax1 sequences . Large distance encountered between tax1407 and tax1 sequences . Large distance encountered between tax1410 and tax1 sequences . Large distance encountered between tax1449 and tax1 sequences . Large distance encountered between tax1490 and tax1 sequences . Large distance encountered between tax1530 and tax1 sequences . Large distance encountered between tax1554 and tax1 sequences . Large distance encountered between tax1560 and tax1 sequences . Large distance encountered between tax192 and tax2 sequences . Large distance encountered between tax198 and tax2 sequences . Large distance encountered between tax386 and tax2 sequences . Large distance encountered between tax387 and tax2 sequences . Large distance encountered between tax409 and tax2 sequences . Large distance encountered between tax466 and tax2 sequences . Large distance encountered between tax467 and tax2 sequences . Large distance encountered between tax468 and tax2 sequences . Large distance encountered between tax1043 and tax2 sequences . Large distance encountered between tax1089 and tax2 sequences . Large distance encountered between tax1096 and tax2 sequences . Large distance encountered between tax1106 and tax2 sequences . Large distance encountered between tax1108 and tax2 sequences . Large distance encountered between tax1110 and tax2 sequences . Large distance encountered between tax1117 and tax2 sequences . Large distance encountered between tax1209 and tax2 sequences . Large distance encountered between tax1225 and tax2 sequences . Large distance encountered between tax1357 and tax2 sequences . Large distance encountered between tax1407 and tax2 sequences . Large distance encountered between tax1410 and tax2 sequences . Large distance encountered between tax1449 and tax2 sequences . Large distance encountered between tax1490 and tax2 sequences . Large distance encountered between tax1494 and tax2 sequences . Large distance encountered between tax1516 and tax2 sequences . Large distance encountered between tax1530 and tax2 sequences . Large distance encountered between tax1554 and tax2 sequences . Large distance encountered between tax1560 and tax2 sequences . Large distance encountered between tax192 and tax3 sequences . Large distance encountered between tax198 and tax3 sequences . Large distance encountered between tax386 and tax3 sequences . Large distance encountered between tax387 and tax3 sequences . Large distance encountered between tax409 and tax3 sequences . Large distance encountered between tax466 and tax3 sequences . Large distance encountered between tax467 and tax3 sequences . Large distance encountered between tax468 and tax3 sequences . Large distance encountered between tax1043 and tax3 sequences . Large distance encountered between tax1089 and tax3 sequences . Large distance encountered between tax1096 and tax3 sequences . Large distance encountered between tax1108 and tax3 sequences . Large distance encountered between tax1110 and tax3 sequences . Large distance encountered between tax1117 and tax3 sequences . Large distance encountered between tax1209 and tax3 sequences . Large distance encountered between tax1225 and tax3 sequences . Large distance encountered between tax1357 and tax3 sequences . Large distance encountered between tax1407 and tax3 sequences . Large distance encountered between tax1410 and tax3 sequences . Large distance encountered between tax1449 and tax3 sequences . Large distance encountered between tax1490 and tax3 sequences . Large distance encountered between tax1530 and tax3 sequences . Large distance encountered between tax1554 and tax3 sequences . Large distance encountered between tax1560 and tax3 sequences . Building BIONJ tree... . Nbytes = 919575552 . Log(lk) : * -> -87576.699631 . Log(lk) : -87576.699631 -> -85063.013429 200 swaps done . Log(lk) : -85063.013429 -> -84483.437695 135 swaps done . Log(lk) : -84483.437695 -> -84239.973530 102 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -80167.293409 -> -79962.138861 93 swaps done . Log(lk) : -79962.138861 -> -79856.304553 72 swaps done . Log(lk) : -79856.304553 -> -79816.570971 48 swaps done . Log(lk) : -79816.570971 -> -79792.330383 44 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79785.032174 -> -79772.199935 30 swaps done . Log(lk) : -79772.199935 -> -79752.612134 25 swaps done . Log(lk) : -79752.612134 -> -79745.609808 16 swaps done . Log(lk) : -79745.609808 -> -79741.313654 18 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79741.118179 -> -79738.999282 16 swaps done . Log(lk) : -79738.999282 -> -79725.670816 15 swaps done . Log(lk) : -79725.670816 -> -79724.207914 15 swaps done . Log(lk) : -79724.207914 -> -79721.276540 14 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79721.249843 -> -79719.599897 14 swaps done . Log(lk) : -79719.599897 -> -79715.094853 13 swaps done . Log(lk) : -79715.094853 -> -79713.494658 15 swaps done . Log(lk) : -79713.494658 -> -79711.823624 13 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79711.821779 -> -79712.988189 12 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79711.821779 -> -79708.550861 12 swaps done . Log(lk) : -79708.550861 -> -79707.623713 7 swaps done . Log(lk) : -79707.623713 -> -79708.461453 7 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79707.623713 -> -79706.533231 7 swaps done . Log(lk) : -79706.533231 -> -79705.184667 6 swaps done . Log(lk) : -79705.184667 -> -79703.253079 7 swaps done . Log(lk) : -79703.253079 -> -79702.062613 6 swaps done . Log(lk) : -79702.062613 -> -79702.031266 4 swaps done . Log(lk) : -79702.031266 -> -79700.318641 4 swaps done . Log(lk) : -79700.318641 -> -79700.280558 5 swaps done . Log(lk) : -79700.280558 -> -79699.766170 4 swaps done . Log(lk) : -79699.766170 -> -79700.254046 5 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79699.766170 -> -79699.396505 5 swaps done . Log(lk) : -79699.396505 -> -79699.205028 5 swaps done . Log(lk) : -79699.205028 -> -79698.999145 3 swaps done . Log(lk) : -79698.999145 -> -79698.942485 3 swaps done . Log(lk) : -79698.942485 -> -79698.988953 2 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79698.942485 -> -79695.522914 2 swaps done . Log(lk) : -79695.522914 -> -79695.153631 2 swaps done . Log(lk) : -79695.153631 -> -79694.747906 1 swap done . Log(lk) : -79694.747906 -> -79694.059339 1 swap done . Log(lk) : -79694.059339 -> -79693.851238 0 swap done . Log(lk) : -79693.851238 -> -79693.795030 0 swap done . Log(lk) : -79693.795030 -> -79693.781256 0 swap done . Log(lk) : -79693.781256 -> -79693.777460 0 swap done . Log(lk) : -79693.777460 -> -79693.776122 0 swap done . Log(lk) : -79693.776122 -> -79693.775523 0 swap done . Last optimization step... . Log(lk) : * -> -79693.775044 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.775044 -> -79693.773570 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.773570 -> -79693.773341 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.773341 -> -79693.773249 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.773249 -> -79693.773195 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.773195 -> -79693.773160 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.773160 -> -79693.773133 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.773133 -> -79693.773111 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.773111 -> -79693.773092 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.773092 -> -79693.773074 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.773074 -> -79693.773057 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.773057 -> -79693.773042 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.773042 -> -79693.773028 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.773028 -> -79693.773014 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.773014 -> -79693.773000 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.773000 -> -79693.772987 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772987 -> -79693.772975 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772975 -> -79693.772962 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772962 -> -79693.772950 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772950 -> -79693.772938 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772938 -> -79693.772926 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772926 -> -79693.772914 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772914 -> -79693.772902 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772902 -> -79693.772890 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772890 -> -79693.772878 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772878 -> -79693.772866 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772866 -> -79693.772853 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772853 -> -79693.772840 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772840 -> -79693.772827 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772827 -> -79693.772813 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772813 -> -79693.772799 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772799 -> -79693.772784 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772784 -> -79693.772768 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772768 -> -79693.772752 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772752 -> -79693.772734 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772734 -> -79693.772715 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772715 -> -79693.772694 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772694 -> -79693.772672 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772672 -> -79693.772648 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772648 -> -79693.772621 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772621 -> -79693.772591 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772591 -> -79693.772558 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772558 -> -79693.772531 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772531 -> -79693.772529 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772529 -> -79693.772527 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772527 -> -79693.772524 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772524 -> -79693.772522 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772522 -> -79693.772519 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772519 -> -79693.772517 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772517 -> -79693.772515 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772515 -> -79693.772512 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772512 -> -79693.772510 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772510 -> -79693.772507 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772507 -> -79693.772505 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772505 -> -79693.772502 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772502 -> -79693.772500 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772500 -> -79693.772498 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772498 -> -79693.772495 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772495 -> -79693.772493 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772493 -> -79693.772490 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772490 -> -79693.772488 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772488 -> -79693.772486 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772486 -> -79693.772483 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772483 -> -79693.772481 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772481 -> -79693.772478 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772478 -> -79693.772476 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772476 -> -79693.772474 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772474 -> -79693.772471 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772471 -> -79693.772469 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772469 -> -79693.772466 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772466 -> -79693.772464 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772464 -> -79693.772462 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772462 -> -79693.772459 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772459 -> -79693.772457 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772457 -> -79693.772454 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772454 -> -79693.772452 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772452 -> -79693.772450 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772450 -> -79693.772447 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772447 -> -79693.772445 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772445 -> -79693.772443 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772443 -> -79693.772440 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772440 -> -79693.772438 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772438 -> -79693.772435 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772435 -> -79693.772433 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772433 -> -79693.772431 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772431 -> -79693.772428 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772428 -> -79693.772426 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772426 -> -79693.772424 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772424 -> -79693.772421 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772421 -> -79693.772419 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772419 -> -79693.772417 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772417 -> -79693.772414 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772414 -> -79693.772412 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772412 -> -79693.772410 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772410 -> -79693.772407 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772407 -> -79693.772405 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772405 -> -79693.772402 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772402 -> -79693.772400 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772400 -> -79693.772398 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -79693.772398 -> -79693.772395 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Final Log(lk) : -79693.772395 . Time used 5h56m59s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 21141.72user 0.00system 5:57:01elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps