Sequence filename : /auto/dufayard/res/bigdatasets_2.4.5_nucl/nucleic_M4056_408x9563_2008.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . 161 sites are made from completely undetermined states ('X', '-', '?' or 'N')... . Compressing sequences... . Computing pairwise distances... . Large distance encountered between tax55 and tax1 sequences . Large distance encountered between tax56 and tax1 sequences . Large distance encountered between tax83 and tax1 sequences . Large distance encountered between tax84 and tax1 sequences . Large distance encountered between tax139 and tax1 sequences . Large distance encountered between tax140 and tax1 sequences . Large distance encountered between tax167 and tax1 sequences . Large distance encountered between tax168 and tax1 sequences . Large distance encountered between tax195 and tax1 sequences . Large distance encountered between tax196 and tax1 sequences . Large distance encountered between tax251 and tax1 sequences . Large distance encountered between tax252 and tax1 sequences . Large distance encountered between tax264 and tax1 sequences . Large distance encountered between tax279 and tax1 sequences . Large distance encountered between tax280 and tax1 sequences . Large distance encountered between tax307 and tax1 sequences . Large distance encountered between tax308 and tax1 sequences . Large distance encountered between tax331 and tax1 sequences . Large distance encountered between tax363 and tax1 sequences . Large distance encountered between tax364 and tax1 sequences . Large distance encountered between tax368 and tax1 sequences . Large distance encountered between tax400 and tax1 sequences . Large distance encountered between tax403 and tax1 sequences . Large distance encountered between tax27 and tax2 sequences . Large distance encountered between tax28 and tax2 sequences . Large distance encountered between tax55 and tax2 sequences . Large distance encountered between tax56 and tax2 sequences . Large distance encountered between tax83 and tax2 sequences . Large distance encountered between tax84 and tax2 sequences . Large distance encountered between tax111 and tax2 sequences . Large distance encountered between tax112 and tax2 sequences . Large distance encountered between tax139 and tax2 sequences . Large distance encountered between tax140 and tax2 sequences . Large distance encountered between tax167 and tax2 sequences . Large distance encountered between tax168 and tax2 sequences . Large distance encountered between tax195 and tax2 sequences . Large distance encountered between tax196 and tax2 sequences . Large distance encountered between tax223 and tax2 sequences . Large distance encountered between tax224 and tax2 sequences . Large distance encountered between tax251 and tax2 sequences . Large distance encountered between tax252 and tax2 sequences . Large distance encountered between tax263 and tax2 sequences . Large distance encountered between tax264 and tax2 sequences . Large distance encountered between tax279 and tax2 sequences . Large distance encountered between tax280 and tax2 sequences . Large distance encountered between tax307 and tax2 sequences . Large distance encountered between tax308 and tax2 sequences . Large distance encountered between tax363 and tax2 sequences . Large distance encountered between tax364 and tax2 sequences . Large distance encountered between tax391 and tax2 sequences . Large distance encountered between tax392 and tax2 sequences . Large distance encountered between tax403 and tax2 sequences . Large distance encountered between tax83 and tax3 sequences . Large distance encountered between tax84 and tax3 sequences . Large distance encountered between tax111 and tax3 sequences . Large distance encountered between tax112 and tax3 sequences . Large distance encountered between tax139 and tax3 sequences . Large distance encountered between tax140 and tax3 sequences . Large distance encountered between tax167 and tax3 sequences . Large distance encountered between tax168 and tax3 sequences . Large distance encountered between tax195 and tax3 sequences . Large distance encountered between tax196 and tax3 sequences . Large distance encountered between tax223 and tax3 sequences . Large distance encountered between tax224 and tax3 sequences . Large distance encountered between tax251 and tax3 sequences . Large distance encountered between tax252 and tax3 sequences . Large distance encountered between tax264 and tax3 sequences . Large distance encountered between tax279 and tax3 sequences . Large distance encountered between tax280 and tax3 sequences . Large distance encountered between tax307 and tax3 sequences . Large distance encountered between tax308 and tax3 sequences . Large distance encountered between tax335 and tax3 sequences . Large distance encountered between tax336 and tax3 sequences . Large distance encountered between tax363 and tax3 sequences . Large distance encountered between tax364 and tax3 sequences . Large distance encountered between tax391 and tax3 sequences . Large distance encountered between tax392 and tax3 sequences . Large distance encountered between tax403 and tax3 sequences . Large distance encountered between tax84 and tax4 sequences . Large distance encountered between tax139 and tax4 sequences . Large distance encountered between tax140 and tax4 sequences . Large distance encountered between tax224 and tax4 sequences . Large distance encountered between tax252 and tax4 sequences . Large distance encountered between tax279 and tax4 sequences . Large distance encountered between tax280 and tax4 sequences . Large distance encountered between tax335 and tax4 sequences . Large distance encountered between tax336 and tax4 sequences . Large distance encountered between tax403 and tax4 sequences . Large distance encountered between tax27 and tax5 sequences . Large distance encountered between tax28 and tax5 sequences . Large distance encountered between tax55 and tax5 sequences . Large distance encountered between tax56 and tax5 sequences . Large distance encountered between tax83 and tax5 sequences . Large distance encountered between tax84 and tax5 sequences . Large distance encountered between tax95 and tax5 sequences . Large distance encountered between tax111 and tax5 sequences . Large distance encountered between tax112 and tax5 sequences . Large distance encountered between tax139 and tax5 sequences . Large distance encountered between tax140 and tax5 sequences . Large distance encountered between tax167 and tax5 sequences . Large distance encountered between tax168 and tax5 sequences . Large distance encountered between tax195 and tax5 sequences . Large distance encountered between tax196 and tax5 sequences . Large distance encountered between tax207 and tax5 sequences . Large distance encountered between tax208 and tax5 sequences . Large distance encountered between tax223 and tax5 sequences . Large distance encountered between tax224 and tax5 sequences . Large distance encountered between tax235 and tax5 sequences . Large distance encountered between tax236 and tax5 sequences . Large distance encountered between tax251 and tax5 sequences . Large distance encountered between tax252 and tax5 sequences . Large distance encountered between tax264 and tax5 sequences . Large distance encountered between tax275 and tax5 sequences . Large distance encountered between tax279 and tax5 sequences . Large distance encountered between tax280 and tax5 sequences . Large distance encountered between tax307 and tax5 sequences . Large distance encountered between tax308 and tax5 sequences . Large distance encountered between tax319 and tax5 sequences . Large distance encountered between tax335 and tax5 sequences . Large distance encountered between tax336 and tax5 sequences . Large distance encountered between tax347 and tax5 sequences . Large distance encountered between tax348 and tax5 sequences . Large distance encountered between tax363 and tax5 sequences . Large distance encountered between tax364 and tax5 sequences . Large distance encountered between tax375 and tax5 sequences . Large distance encountered between tax376 and tax5 sequences . Large distance encountered between tax391 and tax5 sequences . Large distance encountered between tax392 and tax5 sequences . Large distance encountered between tax403 and tax5 sequences . Large distance encountered between tax404 and tax5 sequences . Large distance encountered between tax27 and tax6 sequences . Large distance encountered between tax28 and tax6 sequences . Large distance encountered between tax55 and tax6 sequences . Large distance encountered between tax56 and tax6 sequences . Large distance encountered between tax83 and tax6 sequences . Large distance encountered between tax84 and tax6 sequences . Large distance encountered between tax139 and tax6 sequences . Large distance encountered between tax140 and tax6 sequences . Large distance encountered between tax167 and tax6 sequences . Large distance encountered between tax168 and tax6 sequences . Large distance encountered between tax195 and tax6 sequences . Large distance encountered between tax196 and tax6 sequences . Large distance encountered between tax223 and tax6 sequences . Large distance encountered between tax224 and tax6 sequences . Large distance encountered between tax251 and tax6 sequences . Large distance encountered between tax252 and tax6 sequences . Large distance encountered between tax279 and tax6 sequences . Large distance encountered between tax280 and tax6 sequences . Large distance encountered between tax307 and tax6 sequences . Large distance encountered between tax308 and tax6 sequences . Large distance encountered between tax363 and tax6 sequences . Large distance encountered between tax364 and tax6 sequences . Large distance encountered between tax391 and tax6 sequences . Large distance encountered between tax392 and tax6 sequences . Large distance encountered between tax403 and tax6 sequences . Large distance encountered between tax280 and tax7 sequences . Large distance encountered between tax168 and tax8 sequences . Large distance encountered between tax279 and tax8 sequences . Large distance encountered between tax280 and tax8 sequences . Large distance encountered between tax308 and tax8 sequences . Large distance encountered between tax335 and tax8 sequences . Large distance encountered between tax336 and tax8 sequences . Large distance encountered between tax363 and tax8 sequences . Large distance encountered between tax364 and tax8 sequences . Large distance encountered between tax391 and tax8 sequences . Large distance encountered between tax392 and tax8 sequences . Large distance encountered between tax27 and tax9 sequences . Large distance encountered between tax28 and tax9 sequences . Large distance encountered between tax55 and tax9 sequences . Large distance encountered between tax56 and tax9 sequences . Large distance encountered between tax83 and tax9 sequences . Large distance encountered between tax84 and tax9 sequences . Large distance encountered between tax111 and tax9 sequences . Large distance encountered between tax112 and tax9 sequences . Large distance encountered between tax139 and tax9 sequences . Large distance encountered between tax140 and tax9 sequences . Large distance encountered between tax167 and tax9 sequences . Large distance encountered between tax168 and tax9 sequences . Large distance encountered between tax195 and tax9 sequences . Large distance encountered between tax196 and tax9 sequences . Large distance encountered between tax223 and tax9 sequences . Large distance encountered between tax224 and tax9 sequences . Large distance encountered between tax251 and tax9 sequences . Large distance encountered between tax252 and tax9 sequences . Large distance encountered between tax263 and tax9 sequences . Large distance encountered between tax264 and tax9 sequences . Large distance encountered between tax279 and tax9 sequences . Large distance encountered between tax280 and tax9 sequences . Large distance encountered between tax307 and tax9 sequences . Large distance encountered between tax308 and tax9 sequences . Large distance encountered between tax335 and tax9 sequences . Large distance encountered between tax336 and tax9 sequences . Large distance encountered between tax363 and tax9 sequences . Large distance encountered between tax364 and tax9 sequences . Large distance encountered between tax391 and tax9 sequences . Large distance encountered between tax392 and tax9 sequences . Large distance encountered between tax403 and tax9 sequences . Large distance encountered between tax55 and tax10 sequences . Large distance encountered between tax56 and tax10 sequences . Large distance encountered between tax83 and tax10 sequences . Large distance encountered between tax84 and tax10 sequences . Large distance encountered between tax139 and tax10 sequences . Large distance encountered between tax140 and tax10 sequences . Large distance encountered between tax167 and tax10 sequences . Large distance encountered between tax168 and tax10 sequences . Large distance encountered between tax196 and tax10 sequences . Large distance encountered between tax251 and tax10 sequences . Large distance encountered between tax252 and tax10 sequences . Large distance encountered between tax279 and tax10 sequences . Large distance encountered between tax280 and tax10 sequences . Large distance encountered between tax307 and tax10 sequences . Large distance encountered between tax308 and tax10 sequences . Large distance encountered between tax363 and tax10 sequences . Large distance encountered between tax364 and tax10 sequences . Large distance encountered between tax403 and tax10 sequences . Large distance encountered between tax27 and tax13 sequences . Large distance encountered between tax28 and tax13 sequences . Large distance encountered between tax55 and tax13 sequences . Large distance encountered between tax56 and tax13 sequences . Large distance encountered between tax83 and tax13 sequences . Large distance encountered between tax84 and tax13 sequences . Large distance encountered between tax111 and tax13 sequences . Large distance encountered between tax112 and tax13 sequences . Large distance encountered between tax139 and tax13 sequences . Large distance encountered between tax140 and tax13 sequences . Large distance encountered between tax167 and tax13 sequences . Large distance encountered between tax168 and tax13 sequences . Large distance encountered between tax195 and tax13 sequences . Large distance encountered between tax196 and tax13 sequences . Large distance encountered between tax223 and tax13 sequences . Large distance encountered between tax224 and tax13 sequences . Large distance encountered between tax251 and tax13 sequences . Large distance encountered between tax252 and tax13 sequences . Large distance encountered between tax279 and tax13 sequences . Large distance encountered between tax280 and tax13 sequences . Large distance encountered between tax307 and tax13 sequences . Large distance encountered between tax308 and tax13 sequences . Large distance encountered between tax335 and tax13 sequences . Large distance encountered between tax336 and tax13 sequences . Large distance encountered between tax363 and tax13 sequences . Large distance encountered between tax364 and tax13 sequences . Large distance encountered between tax391 and tax13 sequences . Large distance encountered between tax392 and tax13 sequences . Large distance encountered between tax403 and tax13 sequences . Large distance encountered between tax27 and tax14 sequences . Large distance encountered between tax28 and tax14 sequences . Large distance encountered between tax55 and tax14 sequences . Large distance encountered between tax56 and tax14 sequences . Large distance encountered between tax83 and tax14 sequences . Large distance encountered between tax84 and tax14 sequences . Large distance encountered between tax111 and tax14 sequences . Large distance encountered between tax112 and tax14 sequences . Large distance encountered between tax139 and tax14 sequences . Large distance encountered between tax140 and tax14 sequences . Large distance encountered between tax167 and tax14 sequences . Large distance encountered between tax168 and tax14 sequences . Large distance encountered between tax195 and tax14 sequences . Large distance encountered between tax196 and tax14 sequences . Large distance encountered between tax223 and tax14 sequences . Large distance encountered between tax224 and tax14 sequences . Large distance encountered between tax251 and tax14 sequences . Large distance encountered between tax252 and tax14 sequences . Large distance encountered between tax279 and tax14 sequences . Large distance encountered between tax280 and tax14 sequences . Large distance encountered between tax307 and tax14 sequences . Large distance encountered between tax308 and tax14 sequences . Large distance encountered between tax335 and tax14 sequences . Large distance encountered between tax336 and tax14 sequences . Large distance encountered between tax363 and tax14 sequences . Large distance encountered between tax364 and tax14 sequences . Large distance encountered between tax391 and tax14 sequences . Large distance encountered between tax392 and tax14 sequences . Large distance encountered between tax403 and tax14 sequences . Large distance encountered between tax27 and tax15 sequences . Large distance encountered between tax28 and tax15 sequences . Large distance encountered between tax55 and tax15 sequences . Large distance encountered between tax56 and tax15 sequences . Large distance encountered between tax83 and tax15 sequences . Large distance encountered between tax84 and tax15 sequences . Large distance encountered between tax111 and tax15 sequences . Large distance encountered between tax112 and tax15 sequences . Large distance encountered between tax139 and tax15 sequences . Large distance encountered between tax140 and tax15 sequences . Large distance encountered between tax167 and tax15 sequences . Large distance encountered between tax168 and tax15 sequences . Large distance encountered between tax195 and tax15 sequences . Large distance encountered between tax196 and tax15 sequences . Large distance encountered between tax223 and tax15 sequences . Large distance encountered between tax224 and tax15 sequences . Large distance encountered between tax251 and tax15 sequences . Large distance encountered between tax252 and tax15 sequences . Large distance encountered between tax279 and tax15 sequences . Large distance encountered between tax280 and tax15 sequences . Large distance encountered between tax307 and tax15 sequences . Large distance encountered between tax308 and tax15 sequences . Large distance encountered between tax335 and tax15 sequences . Large distance encountered between tax336 and tax15 sequences . Large distance encountered between tax363 and tax15 sequences . Large distance encountered between tax364 and tax15 sequences . Large distance encountered between tax391 and tax15 sequences . Large distance encountered between tax392 and tax15 sequences . Large distance encountered between tax403 and tax15 sequences . Large distance encountered between tax55 and tax16 sequences . Large distance encountered between tax56 and tax16 sequences . Large distance encountered between tax83 and tax16 sequences . Large distance encountered between tax84 and tax16 sequences . Large distance encountered between tax139 and tax16 sequences . Large distance encountered between tax140 and tax16 sequences . Large distance encountered between tax167 and tax16 sequences . Large distance encountered between tax168 and tax16 sequences . Large distance encountered between tax195 and tax16 sequences . Large distance encountered between tax196 and tax16 sequences . Large distance encountered between tax251 and tax16 sequences . Large distance encountered between tax252 and tax16 sequences . Large distance encountered between tax279 and tax16 sequences . Large distance encountered between tax280 and tax16 sequences . Large distance encountered between tax307 and tax16 sequences . Large distance encountered between tax308 and tax16 sequences . Large distance encountered between tax363 and tax16 sequences . Large distance encountered between tax364 and tax16 sequences . Large distance encountered between tax403 and tax16 sequences . Large distance encountered between tax55 and tax17 sequences . Large distance encountered between tax56 and tax17 sequences . Large distance encountered between tax83 and tax17 sequences . Large distance encountered between tax84 and tax17 sequences . Large distance encountered between tax111 and tax17 sequences . Large distance encountered between tax112 and tax17 sequences . Large distance encountered between tax139 and tax17 sequences . Large distance encountered between tax140 and tax17 sequences . Large distance encountered between tax167 and tax17 sequences . Large distance encountered between tax168 and tax17 sequences . Large distance encountered between tax195 and tax17 sequences . Large distance encountered between tax196 and tax17 sequences . Large distance encountered between tax223 and tax17 sequences . Large distance encountered between tax224 and tax17 sequences . Large distance encountered between tax251 and tax17 sequences . Large distance encountered between tax252 and tax17 sequences . Large distance encountered between tax279 and tax17 sequences . Large distance encountered between tax280 and tax17 sequences . Large distance encountered between tax307 and tax17 sequences . Large distance encountered between tax308 and tax17 sequences . Large distance encountered between tax335 and tax17 sequences . Large distance encountered between tax336 and tax17 sequences . Large distance encountered between tax363 and tax17 sequences . Large distance encountered between tax364 and tax17 sequences . Large distance encountered between tax368 and tax17 sequences . Large distance encountered between tax391 and tax17 sequences . Large distance encountered between tax392 and tax17 sequences . Large distance encountered between tax400 and tax17 sequences . Large distance encountered between tax403 and tax17 sequences . Large distance encountered between tax55 and tax18 sequences . Large distance encountered between tax56 and tax18 sequences . Large distance encountered between tax83 and tax18 sequences . Large distance encountered between tax84 and tax18 sequences . Large distance encountered between tax111 and tax18 sequences . Large distance encountered between tax112 and tax18 sequences . Large distance encountered between tax139 and tax18 sequences . Large distance encountered between tax140 and tax18 sequences . Large distance encountered between tax167 and tax18 sequences . Large distance encountered between tax168 and tax18 sequences . Large distance encountered between tax195 and tax18 sequences . Large distance encountered between tax196 and tax18 sequences . Large distance encountered between tax223 and tax18 sequences . Large distance encountered between tax224 and tax18 sequences . Large distance encountered between tax251 and tax18 sequences . Large distance encountered between tax252 and tax18 sequences . Large distance encountered between tax279 and tax18 sequences . Large distance encountered between tax280 and tax18 sequences . Large distance encountered between tax307 and tax18 sequences . Large distance encountered between tax308 and tax18 sequences . Large distance encountered between tax335 and tax18 sequences . Large distance encountered between tax336 and tax18 sequences . Large distance encountered between tax363 and tax18 sequences . Large distance encountered between tax364 and tax18 sequences . Large distance encountered between tax391 and tax18 sequences . Large distance encountered between tax392 and tax18 sequences . Large distance encountered between tax403 and tax18 sequences . Large distance encountered between tax280 and tax19 sequences . Large distance encountered between tax364 and tax19 sequences . Large distance encountered between tax168 and tax20 sequences . Large distance encountered between tax196 and tax20 sequences . Large distance encountered between tax279 and tax20 sequences . Large distance encountered between tax280 and tax20 sequences . Large distance encountered between tax364 and tax20 sequences . Large distance encountered between tax55 and tax21 sequences . Large distance encountered between tax56 and tax21 sequences . Large distance encountered between tax83 and tax21 sequences . Large distance encountered between tax84 and tax21 sequences . Large distance encountered between tax111 and tax21 sequences . Large distance encountered between tax112 and tax21 sequences . Large distance encountered between tax139 and tax21 sequences . Large distance encountered between tax140 and tax21 sequences . Large distance encountered between tax167 and tax21 sequences . Large distance encountered between tax168 and tax21 sequences . Large distance encountered between tax195 and tax21 sequences . Large distance encountered between tax196 and tax21 sequences . Large distance encountered between tax223 and tax21 sequences . Large distance encountered between tax224 and tax21 sequences . Large distance encountered between tax251 and tax21 sequences . Large distance encountered between tax252 and tax21 sequences . Large distance encountered between tax264 and tax21 sequences . Large distance encountered between tax279 and tax21 sequences . Large distance encountered between tax280 and tax21 sequences . Large distance encountered between tax307 and tax21 sequences . Large distance encountered between tax308 and tax21 sequences . Large distance encountered between tax335 and tax21 sequences . Large distance encountered between tax336 and tax21 sequences . Large distance encountered between tax363 and tax21 sequences . Large distance encountered between tax364 and tax21 sequences . Large distance encountered between tax391 and tax21 sequences . Large distance encountered between tax392 and tax21 sequences . Large distance encountered between tax403 and tax21 sequences . Large distance encountered between tax55 and tax22 sequences . Large distance encountered between tax56 and tax22 sequences . Large distance encountered between tax83 and tax22 sequences . Large distance encountered between tax84 and tax22 sequences . Large distance encountered between tax139 and tax22 sequences . Large distance encountered between tax140 and tax22 sequences . Large distance encountered between tax167 and tax22 sequences . Large distance encountered between tax168 and tax22 sequences . Large distance encountered between tax196 and tax22 sequences . Large distance encountered between tax251 and tax22 sequences . Large distance encountered between tax252 and tax22 sequences . Large distance encountered between tax279 and tax22 sequences . Large distance encountered between tax280 and tax22 sequences . Large distance encountered between tax307 and tax22 sequences . Large distance encountered between tax308 and tax22 sequences . Large distance encountered between tax363 and tax22 sequences . Large distance encountered between tax364 and tax22 sequences . Large distance encountered between tax403 and tax22 sequences . Large distance encountered between tax55 and tax25 sequences . Large distance encountered between tax56 and tax25 sequences . Large distance encountered between tax83 and tax25 sequences . Large distance encountered between tax84 and tax25 sequences . Large distance encountered between tax139 and tax25 sequences . Large distance encountered between tax140 and tax25 sequences . Large distance encountered between tax167 and tax25 sequences . Large distance encountered between tax168 and tax25 sequences . Large distance encountered between tax195 and tax25 sequences . Large distance encountered between tax196 and tax25 sequences . Large distance encountered between tax223 and tax25 sequences . Large distance encountered between tax224 and tax25 sequences . Large distance encountered between tax251 and tax25 sequences . Large distance encountered between tax252 and tax25 sequences . Large distance encountered between tax279 and tax25 sequences . Large distance encountered between tax280 and tax25 sequences . Large distance encountered between tax307 and tax25 sequences . Large distance encountered between tax308 and tax25 sequences . Large distance encountered between tax335 and tax25 sequences . Large distance encountered between tax336 and tax25 sequences . Large distance encountered between tax363 and tax25 sequences . Large distance encountered between tax364 and tax25 sequences . Large distance encountered between tax391 and tax25 sequences . Large distance encountered between tax392 and tax25 sequences . Large distance encountered between tax403 and tax25 sequences . Large distance encountered between tax55 and tax26 sequences . Large distance encountered between tax56 and tax26 sequences . Large distance encountered between tax83 and tax26 sequences . Large distance encountered between tax84 and tax26 sequences . Large distance encountered between tax111 and tax26 sequences . Large distance encountered between tax112 and tax26 sequences . Large distance encountered between tax139 and tax26 sequences . Large distance encountered between tax140 and tax26 sequences . Large distance encountered between tax167 and tax26 sequences . Large distance encountered between tax168 and tax26 sequences . Large distance encountered between tax195 and tax26 sequences . Large distance encountered between tax196 and tax26 sequences . Large distance encountered between tax223 and tax26 sequences . Large distance encountered between tax224 and tax26 sequences . Large distance encountered between tax251 and tax26 sequences . Large distance encountered between tax252 and tax26 sequences . Large distance encountered between tax263 and tax26 sequences . Large distance encountered between tax264 and tax26 sequences . Large distance encountered between tax279 and tax26 sequences . Large distance encountered between tax280 and tax26 sequences . Large distance encountered between tax307 and tax26 sequences . Large distance encountered between tax308 and tax26 sequences . Large distance encountered between tax335 and tax26 sequences . Large distance encountered between tax336 and tax26 sequences . Large distance encountered between tax363 and tax26 sequences . Large distance encountered between tax364 and tax26 sequences . Large distance encountered between tax391 and tax26 sequences . Large distance encountered between tax392 and tax26 sequences . Large distance encountered between tax403 and tax26 sequences . Large distance encountered between tax29 and tax28 sequences . Large distance encountered between tax84 and tax29 sequences . Large distance encountered between tax167 and tax29 sequences . Large distance encountered between tax168 and tax29 sequences . Large distance encountered between tax307 and tax29 sequences . Large distance encountered between tax308 and tax29 sequences . Large distance encountered between tax84 and tax30 sequences . Large distance encountered between tax167 and tax30 sequences . Large distance encountered between tax307 and tax30 sequences . Large distance encountered between tax308 and tax30 sequences . Large distance encountered between tax84 and tax31 sequences . Large distance encountered between tax168 and tax31 sequences . Large distance encountered between tax307 and tax31 sequences . Large distance encountered between tax308 and tax31 sequences . Large distance encountered between tax83 and tax33 sequences . Large distance encountered between tax84 and tax33 sequences . Large distance encountered between tax111 and tax33 sequences . Large distance encountered between tax112 and tax33 sequences . Large distance encountered between tax139 and tax33 sequences . Large distance encountered between tax140 and tax33 sequences . Large distance encountered between tax167 and tax33 sequences . Large distance encountered between tax168 and tax33 sequences . Large distance encountered between tax195 and tax33 sequences . Large distance encountered between tax196 and tax33 sequences . Large distance encountered between tax223 and tax33 sequences . Large distance encountered between tax224 and tax33 sequences . Large distance encountered between tax251 and tax33 sequences . Large distance encountered between tax252 and tax33 sequences . Large distance encountered between tax279 and tax33 sequences . Large distance encountered between tax280 and tax33 sequences . Large distance encountered between tax307 and tax33 sequences . Large distance encountered between tax308 and tax33 sequences . Large distance encountered between tax335 and tax33 sequences . Large distance encountered between tax336 and tax33 sequences . Large distance encountered between tax363 and tax33 sequences . Large distance encountered between tax364 and tax33 sequences . Large distance encountered between tax391 and tax33 sequences . Large distance encountered between tax392 and tax33 sequences . Large distance encountered between tax84 and tax34 sequences . Large distance encountered between tax167 and tax34 sequences . Large distance encountered between tax168 and tax34 sequences . Large distance encountered between tax307 and tax34 sequences . Large distance encountered between tax308 and tax34 sequences . Large distance encountered between tax84 and tax37 sequences . Large distance encountered between tax167 and tax37 sequences . Large distance encountered between tax168 and tax37 sequences . Large distance encountered between tax307 and tax37 sequences . Large distance encountered between tax308 and tax37 sequences . Large distance encountered between tax84 and tax38 sequences . Large distance encountered between tax167 and tax38 sequences . Large distance encountered between tax168 and tax38 sequences . Large distance encountered between tax307 and tax38 sequences . Large distance encountered between tax308 and tax38 sequences . Large distance encountered between tax84 and tax41 sequences . Large distance encountered between tax167 and tax41 sequences . Large distance encountered between tax307 and tax41 sequences . Large distance encountered between tax308 and tax41 sequences . Large distance encountered between tax84 and tax42 sequences . Large distance encountered between tax167 and tax42 sequences . Large distance encountered between tax307 and tax42 sequences . Large distance encountered between tax308 and tax42 sequences . Large distance encountered between tax83 and tax43 sequences . Large distance encountered between tax84 and tax43 sequences . Large distance encountered between tax111 and tax43 sequences . Large distance encountered between tax112 and tax43 sequences . Large distance encountered between tax139 and tax43 sequences . Large distance encountered between tax140 and tax43 sequences . Large distance encountered between tax167 and tax43 sequences . Large distance encountered between tax168 and tax43 sequences . Large distance encountered between tax195 and tax43 sequences . Large distance encountered between tax196 and tax43 sequences . Large distance encountered between tax223 and tax43 sequences . Large distance encountered between tax224 and tax43 sequences . Large distance encountered between tax251 and tax43 sequences . Large distance encountered between tax252 and tax43 sequences . Large distance encountered between tax279 and tax43 sequences . Large distance encountered between tax280 and tax43 sequences . Large distance encountered between tax307 and tax43 sequences . Large distance encountered between tax308 and tax43 sequences . Large distance encountered between tax335 and tax43 sequences . Large distance encountered between tax336 and tax43 sequences . Large distance encountered between tax363 and tax43 sequences . Large distance encountered between tax364 and tax43 sequences . Large distance encountered between tax391 and tax43 sequences . Large distance encountered between tax392 and tax43 sequences . Large distance encountered between tax84 and tax44 sequences . Large distance encountered between tax307 and tax44 sequences . Large distance encountered between tax308 and tax44 sequences . Large distance encountered between tax84 and tax45 sequences . Large distance encountered between tax167 and tax45 sequences . Large distance encountered between tax307 and tax45 sequences . Large distance encountered between tax308 and tax45 sequences . Large distance encountered between tax84 and tax46 sequences . Large distance encountered between tax307 and tax46 sequences . Large distance encountered between tax308 and tax46 sequences . Large distance encountered between tax307 and tax47 sequences . Large distance encountered between tax308 and tax47 sequences . Large distance encountered between tax308 and tax48 sequences . Large distance encountered between tax84 and tax49 sequences . Large distance encountered between tax167 and tax49 sequences . Large distance encountered between tax307 and tax49 sequences . Large distance encountered between tax308 and tax49 sequences . Large distance encountered between tax84 and tax50 sequences . Large distance encountered between tax167 and tax50 sequences . Large distance encountered between tax168 and tax50 sequences . Large distance encountered between tax307 and tax50 sequences . Large distance encountered between tax308 and tax50 sequences . Large distance encountered between tax84 and tax53 sequences . Large distance encountered between tax167 and tax53 sequences . Large distance encountered between tax307 and tax53 sequences . Large distance encountered between tax308 and tax53 sequences . Large distance encountered between tax84 and tax54 sequences . Large distance encountered between tax167 and tax54 sequences . Large distance encountered between tax307 and tax54 sequences . Large distance encountered between tax308 and tax54 sequences . Large distance encountered between tax335 and tax57 sequences . Large distance encountered between tax336 and tax57 sequences . Large distance encountered between tax84 and tax61 sequences . Large distance encountered between tax167 and tax61 sequences . Large distance encountered between tax224 and tax61 sequences . Large distance encountered between tax252 and tax61 sequences . Large distance encountered between tax307 and tax61 sequences . Large distance encountered between tax308 and tax61 sequences . Large distance encountered between tax335 and tax69 sequences . Large distance encountered between tax84 and tax71 sequences . Large distance encountered between tax140 and tax71 sequences . Large distance encountered between tax167 and tax71 sequences . Large distance encountered between tax168 and tax71 sequences . Large distance encountered between tax307 and tax71 sequences . Large distance encountered between tax308 and tax71 sequences . Large distance encountered between tax363 and tax183 sequences . Large distance encountered between tax364 and tax183 sequences . Large distance encountered between tax307 and tax211 sequences . Large distance encountered between tax308 and tax211 sequences . Large distance encountered between tax335 and tax239 sequences . Large distance encountered between tax336 and tax239 sequences . Large distance encountered between tax363 and tax265 sequences . Large distance encountered between tax364 and tax265 sequences . Building BIONJ tree... . Nbytes = 2043712896 . Log(lk) : * -> -225833.357644 . Log(lk) : -225833.357644 -> -205331.772381 93 swaps done . Log(lk) : -205331.772381 -> -200728.467984 84 swaps done . Log(lk) : -200728.467984 -> -200511.900988 65 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -194353.550451 -> -193281.721984 57 swaps done . Log(lk) : -193281.721984 -> -191999.473711 57 swaps done . Log(lk) : -191999.473711 -> -191328.794322 47 swaps done . Log(lk) : -191328.794322 -> -190539.642101 38 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -190430.112939 -> -190061.074123 38 swaps done . Log(lk) : -190061.074123 -> -189811.867206 39 swaps done . Log(lk) : -189811.867206 -> -189473.824820 39 swaps done . Log(lk) : -189473.824820 -> -189345.063358 30 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -189221.674628 -> -189191.352283 31 swaps done . Log(lk) : -189191.352283 -> -189233.012520 31 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -189191.352283 -> -188621.339582 31 swaps done . Log(lk) : -188621.339582 -> -188418.762088 27 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -188399.668186 -> -188802.769445 24 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -188399.668186 -> -188288.885878 24 swaps done . Log(lk) : -188288.885878 -> -188180.106127 20 swaps done . Log(lk) : -188180.106127 -> -188606.245760 25 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -188180.106127 -> -188177.691666 25 swaps done . Log(lk) : -188177.691666 -> -188127.811834 20 swaps done . Log(lk) : -188127.811834 -> -188566.373452 24 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -188127.811834 -> -188090.107366 24 swaps done . Log(lk) : -188090.107366 -> -188024.420142 21 swaps done . Log(lk) : -188024.420142 -> -188399.612729 21 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -188024.420142 -> -187992.486333 21 swaps done . Log(lk) : -187992.486333 -> -187975.053195 15 swaps done . Log(lk) : -187975.053195 -> -188297.998151 18 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187975.053195 -> -187935.851767 18 swaps done . Log(lk) : -187935.851767 -> -187929.309560 15 swaps done . Log(lk) : -187929.309560 -> -188249.557154 17 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187929.309560 -> -187908.060917 17 swaps done . Log(lk) : -187908.060917 -> -187930.139968 12 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187908.060917 -> -187803.683116 12 swaps done . Log(lk) : -187803.683116 -> -187816.628701 12 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187803.683116 -> -187777.607771 12 swaps done . Log(lk) : -187777.607771 -> -187831.113786 12 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187777.607771 -> -187756.926789 12 swaps done . Log(lk) : -187756.926789 -> -187775.597053 10 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187756.926789 -> -187732.496975 10 swaps done . Log(lk) : -187732.496975 -> -187764.796688 10 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187732.496975 -> -187732.232286 10 swaps done . Log(lk) : -187732.232286 -> -187754.998171 9 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187732.232286 -> -187715.345680 9 swaps done . Log(lk) : -187715.345680 -> -187741.849007 9 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187715.345680 -> -187714.220664 9 swaps done . Log(lk) : -187714.220664 -> -187722.541573 8 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187714.220664 -> -187691.896478 8 swaps done . Log(lk) : -187691.896478 -> -187659.302986 9 swaps done . Log(lk) : -187659.302986 -> -187659.530079 8 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187659.302986 -> -187626.329457 8 swaps done . Log(lk) : -187626.329457 -> -187613.746970 6 swaps done . Log(lk) : -187613.746970 -> -187565.375796 4 swaps done . Log(lk) : -187565.375796 -> -187550.135696 6 swaps done . Log(lk) : -187550.135696 -> -187578.997470 6 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187550.135696 -> -187523.375584 6 swaps done . Log(lk) : -187523.375584 -> -187529.521703 4 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187523.375584 -> -187512.881090 4 swaps done . Log(lk) : -187512.881090 -> -187507.441809 3 swaps done . Log(lk) : -187507.441809 -> -187510.529385 3 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187507.441809 -> -187504.879434 3 swaps done . Log(lk) : -187504.879434 -> -187502.225096 3 swaps done . Log(lk) : -187502.225096 -> -187500.772520 1 swap done . Log(lk) : -187500.772520 -> -187497.136792 1 swap done . Log(lk) : -187497.136792 -> -187495.044597 1 swap done . Log(lk) : -187495.044597 -> -187520.933462 3 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187495.044597 -> -187484.716217 3 swaps done . Log(lk) : -187484.716217 -> -187485.672235 2 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187484.716217 -> -187483.665406 2 swaps done . Log(lk) : -187483.665406 -> -187483.936612 1 swap done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187483.665406 -> -187483.238557 1 swap done . Log(lk) : -187483.238557 -> -187482.971169 0 swap done . Log(lk) : -187482.971169 -> -187482.902419 0 swap done . Log(lk) : -187482.902419 -> -187483.045914 0 swap done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187482.902419 -> -187482.787810 0 swap done . Log(lk) : -187482.787810 -> -187482.776613 0 swap done . Log(lk) : -187482.776613 -> -187482.918179 0 swap done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187482.776613 -> -187482.701971 0 swap done . Log(lk) : -187482.701971 -> -187482.709958 0 swap done . Last optimization step... . Log(lk) : * -> -187482.643879 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187482.643879 -> -187482.606883 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187482.606883 -> -187482.595367 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187482.595367 -> -187482.592441 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187482.592441 -> -187482.591276 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187482.591276 -> -187482.590824 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187482.590824 -> -187482.590648 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187482.590648 -> -187482.590578 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187482.590578 -> -187482.590549 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187482.590549 -> -187482.590535 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -187482.590535 -> -187482.590529 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Log(lk) : -187482.590529 -> -187482.590525 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187482.590525 -> -187482.590524 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -187482.590524 -> -187482.590523 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -187482.590523 . Time used 4h28m56s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 16132.56user 0.00system 4:28:59elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps