Sequence filename : 				 /auto/dufayard/res/bigdatasets_2.4.5_prot/proteic_M2480_40x430_2005.phy
Data type :             			 aa
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 WAG
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 41537496

. Log(lk) :               * ->   -24265.276226 
. Log(lk) :   -24265.276226 ->   -24049.893263   6 swaps done 
. Log(lk) :   -24049.893263 ->   -23999.998286   4 swaps done 
. Log(lk) :   -23999.998286 ->   -23984.646693   3 swaps done 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -23889.498081 ->   -23879.141604   3 swaps done 
. Log(lk) :   -23879.141604 ->   -23876.426221   0 swap  done
. Log(lk) :   -23876.426221 ->   -23876.003214   0 swap  done
. Log(lk) :   -23876.003214 ->   -23875.892108   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -23875.769960 ->   -23875.710946   0 swap  done
. Log(lk) :   -23875.710946 ->   -23875.687209   0 swap  done
. Log(lk) :   -23875.687209 ->   -23875.676561   0 swap  done

. Last optimization step...

. Log(lk) :               * ->   -23875.669349 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -23875.669349 ->   -23875.661733 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -23875.661733 ->   -23875.659970 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -23875.659970 ->   -23875.659462 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -23875.659462 ->   -23875.659281 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -23875.659281 ->   -23875.659237 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -23875.659237 ->   -23875.659222 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -23875.659222 ->   -23875.659218 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -23875.659218 ->   -23875.659217 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -23875.659217 ->   -23875.659216 

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -23875.659216 

. Time used 0h3m24s

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200.60user 0.00system 3:23.98elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps