Sequence filename : /auto/dufayard/res/bigdatasets_2.4.5_prot/proteic_M2577_40x12260_2005.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 1194385192 . Log(lk) : * -> -344979.547155 . Log(lk) : -344979.547155 -> -342527.202183 6 swaps done . Log(lk) : -342527.202183 -> -342298.900332 5 swaps done . Log(lk) : -342298.900332 -> -342170.088225 4 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -340260.912612 -> -340172.448063 4 swaps done . Log(lk) : -340172.448063 -> -340075.644971 3 swaps done . Log(lk) : -340075.644971 -> -340084.671787 2 swaps done . Moving backward (topology + branch lengths) . Optimisation of the gamma shape parameter... . Log(lk) : -340075.644971 -> -339949.895583 2 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -339949.895583 -> -339922.825350 0 swap done . Log(lk) : -339922.825350 -> -339915.713848 0 swap done . Log(lk) : -339915.713848 -> -339912.694832 0 swap done . Log(lk) : -339912.694832 -> -339910.875126 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -339910.874993 -> -339909.874902 0 swap done . Log(lk) : -339909.874902 -> -339909.232169 0 swap done . Last optimization step... . Log(lk) : * -> -339908.220785 . Optimisation of the gamma shape parameter... . Log(lk) : -339908.220785 -> -339908.081838 . Optimisation of the gamma shape parameter... . Log(lk) : -339908.081838 -> -339907.989276 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.989276 -> -339907.923702 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.923702 -> -339907.877888 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.877888 -> -339907.845480 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.845480 -> -339907.822775 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.822775 -> -339907.806646 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.806646 -> -339907.795266 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.795266 -> -339907.787167 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.787167 -> -339907.781424 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.781424 -> -339907.777347 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.777347 -> -339907.774457 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.774457 -> -339907.772408 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.772408 -> -339907.770949 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.770949 -> -339907.769918 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.769918 -> -339907.769185 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.769185 -> -339907.768667 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.768667 -> -339907.768301 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.768301 -> -339907.768042 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.768042 -> -339907.767859 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.767859 -> -339907.767730 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.767730 -> -339907.767638 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.767638 -> -339907.767573 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.767573 -> -339907.767527 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.767527 -> -339907.767494 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.767494 -> -339907.767471 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.767471 -> -339907.767455 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.767455 -> -339907.767444 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.767444 -> -339907.767436 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.767436 -> -339907.767430 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.767430 -> -339907.767426 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.767426 -> -339907.767423 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.767423 -> -339907.767421 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.767421 -> -339907.767420 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.767420 -> -339907.767419 . Optimisation of the gamma shape parameter... . Log(lk) : -339907.767419 -> -339907.767418 . Optimisation of the gamma shape parameter... . Final Log(lk) : -339907.767418 . Time used 3h19m35s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 11971.52user 0.00system 3:19:36elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps