Sequence filename : /auto/dufayard/res/bigdatasets_2.4.5_prot/proteic_M2580_40x12034_2005.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 1200735536 . Log(lk) : * -> -408282.810969 . Log(lk) : -408282.810969 -> -405501.923248 4 swaps done . Log(lk) : -405501.923248 -> -405177.220111 2 swaps done . Log(lk) : -405177.220111 -> -405119.696205 1 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -404002.215796 -> -403976.267701 1 swap done . Log(lk) : -403976.267701 -> -403964.483748 1 swap done . Log(lk) : -403964.483748 -> -403964.615072 1 swap done . Moving backward (topology + branch lengths) . Optimisation of the gamma shape parameter... . Log(lk) : -403964.483748 -> -403956.678169 1 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -403956.678169 -> -403952.364519 0 swap done . Log(lk) : -403952.364519 -> -403951.202886 0 swap done . Log(lk) : -403951.202886 -> -403950.658589 0 swap done . Log(lk) : -403950.658589 -> -403950.356465 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -403950.350776 -> -403950.171042 0 swap done . Log(lk) : -403950.171042 -> -403950.064430 0 swap done . Last optimization step... . Log(lk) : * -> -403949.967149 . Optimisation of the gamma shape parameter... . Log(lk) : -403949.967149 -> -403949.923659 . Optimisation of the gamma shape parameter... . Log(lk) : -403949.923659 -> -403949.910484 . Optimisation of the gamma shape parameter... . Log(lk) : -403949.910484 -> -403949.905356 . Optimisation of the gamma shape parameter... . Log(lk) : -403949.905356 -> -403949.903739 . Optimisation of the gamma shape parameter... . Log(lk) : -403949.903739 -> -403949.903121 . Optimisation of the gamma shape parameter... . Log(lk) : -403949.903121 -> -403949.902924 . Optimisation of the gamma shape parameter... . Log(lk) : -403949.902924 -> -403949.902850 . Optimisation of the gamma shape parameter... . Log(lk) : -403949.902850 -> -403949.902826 . Optimisation of the gamma shape parameter... . Log(lk) : -403949.902826 -> -403949.902818 . Optimisation of the gamma shape parameter... . Log(lk) : -403949.902818 -> -403949.902815 . Optimisation of the gamma shape parameter... . Log(lk) : -403949.902815 -> -403949.902814 . Optimisation of the gamma shape parameter... . Final Log(lk) : -403949.902814 . Time used 1h56m26s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 6969.26user 0.00system 1:56:26elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps