Sequence filename : /auto/dufayard/res/bigdatasets_2.4.5_prot/proteic_M2883_91x7386_2007.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . 526 sites are made from completely undetermined states ('X', '-', '?')... . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 1109364672 . Log(lk) : * -> -170813.937154 . Log(lk) : -170813.937154 -> -165319.820813 10 swaps done . Log(lk) : -165319.820813 -> -164063.843145 8 swaps done . Log(lk) : -164063.843145 -> -163637.408107 5 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -158969.331158 -> -158609.886092 4 swaps done . Log(lk) : -158609.886092 -> -158473.590434 3 swaps done . Log(lk) : -158473.590434 -> -158402.144649 3 swaps done . Log(lk) : -158402.144649 -> -158369.537976 2 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -158368.800956 -> -158329.360533 2 swaps done . Log(lk) : -158329.360533 -> -158243.812743 2 swaps done . Log(lk) : -158243.812743 -> -158173.126636 2 swaps done . Log(lk) : -158173.126636 -> -158088.857877 3 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -158087.947653 -> -157901.002538 2 swaps done . Log(lk) : -157901.002538 -> -157761.608251 3 swaps done . Log(lk) : -157761.608251 -> -157681.201247 2 swaps done . Log(lk) : -157681.201247 -> -157447.052617 2 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -157446.244674 -> -157129.347725 2 swaps done . Log(lk) : -157129.347725 -> -156960.205514 2 swaps done . Log(lk) : -156960.205514 -> -156941.670973 1 swap done . Log(lk) : -156941.670973 -> -156938.526466 1 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -156938.425758 -> -156937.247687 0 swap done . Log(lk) : -156937.247687 -> -156937.142966 0 swap done . Log(lk) : -156937.142966 -> -156937.126482 0 swap done . Log(lk) : -156937.126482 -> -156937.121987 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -156937.121769 -> -156937.119541 0 swap done . Log(lk) : -156937.119541 -> -156937.118125 0 swap done . Last optimization step... . Log(lk) : * -> -156937.116430 . Optimisation of the gamma shape parameter... . Log(lk) : -156937.116430 -> -156937.115311 . Optimisation of the gamma shape parameter... . Log(lk) : -156937.115311 -> -156937.114745 . Optimisation of the gamma shape parameter... . Log(lk) : -156937.114745 -> -156937.114477 . Optimisation of the gamma shape parameter... . Log(lk) : -156937.114477 -> -156937.114350 . Optimisation of the gamma shape parameter... . Log(lk) : -156937.114350 -> -156937.114291 . Optimisation of the gamma shape parameter... . Log(lk) : -156937.114291 -> -156937.114263 . Optimisation of the gamma shape parameter... . Log(lk) : -156937.114263 -> -156937.114250 . Optimisation of the gamma shape parameter... . Log(lk) : -156937.114250 -> -156937.114243 . Optimisation of the gamma shape parameter... . Log(lk) : -156937.114243 -> -156937.114240 . Optimisation of the gamma shape parameter... . Log(lk) : -156937.114240 -> -156937.114239 . Optimisation of the gamma shape parameter... . Log(lk) : -156937.114239 -> -156937.114238 . Optimisation of the gamma shape parameter... . Final Log(lk) : -156937.114238 . Time used 3h6m17s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 11111.31user 0.00system 3:06:18elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps