Sequence filename : /auto/dufayard/res/bigdatasets_2.4.5_prot/proteic_M3755_77x9918_2008.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 1961084112 . Log(lk) : * -> -371563.973493 . Log(lk) : -371563.973493 -> -366914.647163 9 swaps done . Log(lk) : -366914.647163 -> -365389.095107 12 swaps done . Log(lk) : -365389.095107 -> -365245.998109 8 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -362773.602128 -> -362515.326005 6 swaps done . Log(lk) : -362515.326005 -> -362592.632955 6 swaps done . Moving backward (topology + branch lengths) . Optimisation of the gamma shape parameter... . Log(lk) : -362515.326005 -> -362305.922372 6 swaps done . Log(lk) : -362305.922372 -> -362278.046156 3 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -362277.968384 -> -362230.269306 3 swaps done . Log(lk) : -362230.269306 -> -362175.711999 3 swaps done . Log(lk) : -362175.711999 -> -362216.780353 3 swaps done . Moving backward (topology + branch lengths) . Optimisation of the gamma shape parameter... . Log(lk) : -362175.711999 -> -362043.756170 3 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -362043.756170 -> -362039.459065 2 swaps done . Log(lk) : -362039.459065 -> -362064.887413 2 swaps done . Moving backward (topology + branch lengths) . Optimisation of the gamma shape parameter... . Log(lk) : -362039.459065 -> -362003.772874 2 swaps done . Log(lk) : -362003.772874 -> -362002.214374 2 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -362002.199278 -> -362001.856777 3 swaps done . Log(lk) : -362001.856777 -> -361996.601813 4 swaps done . Log(lk) : -361996.601813 -> -362032.390659 5 swaps done . Moving backward (topology + branch lengths) . Optimisation of the gamma shape parameter... . Log(lk) : -361996.601813 -> -361965.810423 5 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -361965.810423 -> -361930.536494 4 swaps done . Log(lk) : -361930.536494 -> -361889.152341 3 swaps done . Log(lk) : -361889.152341 -> -361833.001981 3 swaps done . Log(lk) : -361833.001981 -> -361801.652608 3 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -361801.641047 -> -361781.172585 2 swaps done . Log(lk) : -361781.172585 -> -361781.892750 1 swap done . Moving backward (topology + branch lengths) . Optimisation of the gamma shape parameter... . Log(lk) : -361781.172585 -> -361760.573938 1 swap done . Log(lk) : -361760.573938 -> -361750.724546 1 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -361750.724541 -> -361741.028421 0 swap done . Log(lk) : -361741.028421 -> -361739.237108 0 swap done . Log(lk) : -361739.237108 -> -361738.488036 0 swap done . Log(lk) : -361738.488036 -> -361738.085059 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -361738.084832 -> -361737.830111 0 swap done . Log(lk) : -361737.830111 -> -361737.648800 0 swap done . Last optimization step... . Log(lk) : * -> -361737.422416 . Optimisation of the gamma shape parameter... . Log(lk) : -361737.422416 -> -361737.247540 . Optimisation of the gamma shape parameter... . Log(lk) : -361737.247540 -> -361737.115640 . Optimisation of the gamma shape parameter... . Log(lk) : -361737.115640 -> -361737.012044 . Optimisation of the gamma shape parameter... . Log(lk) : -361737.012044 -> -361736.930823 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.930823 -> -361736.864469 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.864469 -> -361736.811024 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.811024 -> -361736.766298 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.766298 -> -361736.729570 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.729570 -> -361736.725024 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.725024 -> -361736.721699 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.721699 -> -361736.719294 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.719294 -> -361736.717543 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.717543 -> -361736.716272 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.716272 -> -361736.715347 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.715347 -> -361736.714674 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.714674 -> -361736.714188 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.714188 -> -361736.713834 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.713834 -> -361736.713575 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.713575 -> -361736.713389 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.713389 -> -361736.713253 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.713253 -> -361736.713154 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.713154 -> -361736.713081 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.713081 -> -361736.713030 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.713030 -> -361736.712991 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.712991 -> -361736.712964 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.712964 -> -361736.712944 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.712944 -> -361736.712930 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.712930 -> -361736.712919 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.712919 -> -361736.712912 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.712912 -> -361736.712906 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.712906 -> -361736.712902 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.712902 -> -361736.712899 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.712899 -> -361736.712897 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.712897 -> -361736.712895 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.712895 -> -361736.712894 . Optimisation of the gamma shape parameter... . Log(lk) : -361736.712894 -> -361736.712894 . Optimisation of the gamma shape parameter... . Final Log(lk) : -361736.712894 . Time used 8h22m31s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 29954.41user 0.00system 8:22:33elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps