.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2580_40x12034_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 11534 patterns found. (out of a total of 12034 sites) . 1469 sites without polymorphism (12.21%). . Computing pairwise distances... . Building BioNJ tree... . WARNING: this analysis requires at least 1080Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 22 sec) [ -406584.1629] [Alpha ][ 0.877636] . ( 29 sec) [ -406584.1629] [Topology ] . ( 117 sec) [ -404573.4434] [Topology ] . ( 212 sec) [ -404169.2200] [Topology ] . ( 303 sec) [ -404085.6687] [Topology ] . ( 395 sec) [ -404060.3778] [Topology ] . ( 486 sec) [ -404047.8190] [Topology ] . ( 578 sec) [ -404040.6439] [Topology ] . ( 671 sec) [ -404036.3277] [Topology ] . ( 763 sec) [ -404033.6700] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1735 sec) [ -403962.2730] [Alpha ][ 1.025558] . ( 1742 sec) [ -403962.2730] [Topology ] . ( 1833 sec) [ -403956.7113] [Topology ] . ( 1928 sec) [ -403953.9900] [Topology ] . ( 2027 sec) [ -403952.4394] [Topology ] . ( 2120 sec) [ -403951.5225] [Topology ] . ( 2213 sec) [ -403950.9825] [Topology ] . ( 2306 sec) [ -403950.6619] [Topology ] . Checking for NNIs, optimizing five branches... . ( 3255 sec) [ -403950.4498] [Alpha ][ 1.034504] . ( 3262 sec) [ -403950.4498] [Topology ] . ( 3355 sec) [ -403950.2293] [Topology ] . ( 3448 sec) [ -403950.1001] [Topology ] . ( 3541 sec) [ -403950.0229] [Topology ] . ( 3634 sec) [ -403949.9769] [Topology ] . ( 3727 sec) [ -403949.9492] [Topology ] . ( 3820 sec) [ -403949.9327] [Topology ] . Checking for NNIs, optimizing five branches... . ( 4758 sec) [ -403949.9299] [Alpha ][ 1.035538] . ( 4765 sec) [ -403949.9299] [Topology ] . ( 4859 sec) [ -403949.9192] [Topology ] . ( 4952 sec) [ -403949.9129] [Topology ] . ( 5045 sec) [ -403949.9090] [Topology ] . ( 5138 sec) [ -403949.9067] [Topology ] . ( 5231 sec) [ -403949.9053] [Topology ] . ( 5324 sec) [ -403949.9045] [Topology ] . Checking for NNIs, optimizing five branches... . ( 6261 sec) [ -403949.9045] [Alpha ][ 1.035538] . ( 6268 sec) [ -403949.9045] [Topology ] . ( 6361 sec) [ -403949.9040] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -403949.903987. . Printing the most likely tree in file 'proteic_M2580_40x12034_2005.phy_phyml_tree.txt'... . Time used 2h17m0s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 8213.80user 0.00system 2:17:10elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps