IMPORTANT WARNING: Sequences tax30 and tax40 are exactly identical


IMPORTANT WARNING: Sequences tax33 and tax35 are exactly identical


IMPORTANT WARNING: Sequences tax33 and tax37 are exactly identical


IMPORTANT WARNING: Sequences tax33 and tax41 are exactly identical


IMPORTANT WARNING: Sequences tax56 and tax57 are exactly identical


IMPORTANT WARNING: Sequences tax56 and tax130 are exactly identical


IMPORTANT WARNING: Sequences tax56 and tax132 are exactly identical


IMPORTANT WARNING: Sequences tax56 and tax137 are exactly identical


IMPORTANT WARNING: Sequences tax100 and tax102 are exactly identical


IMPORTANT WARNING: Sequences tax100 and tax103 are exactly identical


IMPORTANT WARNING: Sequences tax105 and tax106 are exactly identical


IMPORTANT WARNING: Sequences tax105 and tax107 are exactly identical


IMPORTANT WARNING: Sequences tax105 and tax109 are exactly identical


IMPORTANT WARNING: Sequences tax105 and tax110 are exactly identical


IMPORTANT WARNING: Sequences tax114 and tax116 are exactly identical


IMPORTANT WARNING: Sequences tax134 and tax136 are exactly identical


IMPORTANT WARNING: Sequences tax157 and tax162 are exactly identical


IMPORTANT WARNING: Sequences tax165 and tax166 are exactly identical


IMPORTANT WARNING: Sequences tax170 and tax171 are exactly identical


IMPORTANT WARNING: Sequences tax170 and tax179 are exactly identical


IMPORTANT WARNING: Sequences tax173 and tax175 are exactly identical


IMPORTANT WARNING: Sequences tax184 and tax186 are exactly identical


IMPORTANT WARNING: Sequences tax189 and tax191 are exactly identical


IMPORTANT WARNING: Sequences tax205 and tax208 are exactly identical


IMPORTANT WARNING: Sequences tax205 and tax209 are exactly identical


IMPORTANT WARNING: Sequences tax225 and tax228 are exactly identical


IMPORTANT WARNING: Sequences tax233 and tax237 are exactly identical


IMPORTANT WARNING: Sequences tax269 and tax271 are exactly identical


IMPORTANT WARNING: Sequences tax289 and tax292 are exactly identical


IMPORTANT WARNING: Sequences tax299 and tax302 are exactly identical


IMPORTANT WARNING: Sequences tax299 and tax303 are exactly identical


IMPORTANT WARNING: Sequences tax299 and tax304 are exactly identical


IMPORTANT WARNING: Sequences tax299 and tax306 are exactly identical


IMPORTANT WARNING: Sequences tax313 and tax334 are exactly identical


IMPORTANT WARNING: Sequences tax319 and tax320 are exactly identical


IMPORTANT WARNING: Sequences tax319 and tax322 are exactly identical


IMPORTANT WARNING: Sequences tax319 and tax326 are exactly identical


IMPORTANT WARNING: Sequences tax319 and tax327 are exactly identical


IMPORTANT WARNING: Sequences tax328 and tax329 are exactly identical


IMPORTANT WARNING: Sequences tax330 and tax336 are exactly identical


IMPORTANT WARNING: Sequences tax331 and tax337 are exactly identical


IMPORTANT WARNING: Sequences tax331 and tax340 are exactly identical


IMPORTANT WARNING: Sequences tax331 and tax341 are exactly identical

IMPORTANT WARNING
Found 43 sequences that are exactly identical to other sequences in the alignment.
Normally they should be excluded from the analysis.

Just in case you might need it, an alignment file with 
sequence duplicates removed is printed to file /auto/dufayard/res/bigdatasets_raxml_nucl/nucleic_M2573_346x897_2006.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 649 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.113774

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
Empirical Base Frequencies:
pi(A): 0.168644 pi(C): 0.308864 pi(G): 0.272132 pi(T): 0.250360



9.259793 -9783.328342
19.284981 -9723.534330
47.799573 -9718.305963
103.622138 -9710.631152
190.973330 -9710.631152
321.265814 -9673.038799
351.306429 -9661.592187
390.777469 -9657.885367
414.234892 -9656.463426
471.283192 -9654.445309
513.730424 -9652.854514
554.533983 -9652.609693
587.291608 -9652.516366
634.955812 -9652.227052
685.466747 -9652.135980
728.236755 -9652.048044
805.609323 -9651.939127
915.914757 -9651.939127
976.238168 -9623.098228


Overall Time for 1 Inference 976.308102
Likelihood   : -9623.098228


Parsimony starting tree written to:    /auto/dufayard/res/bigdatasets_raxml_nucl/./RAxML_parsimonyTree.nucleic_M2573_346x897_2006.phy_RAXML
Final tree written to:                 /auto/dufayard/res/bigdatasets_raxml_nucl/./RAxML_result.nucleic_M2573_346x897_2006.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/bigdatasets_raxml_nucl/./RAxML_log.nucleic_M2573_346x897_2006.phy_RAXML
Execution information file written to: /auto/dufayard/res/bigdatasets_raxml_nucl/./RAxML_info.nucleic_M2573_346x897_2006.phy_RAXML