IMPORTANT WARNING: Sequences tax8 and tax10 are exactly identical


IMPORTANT WARNING: Sequences tax8 and tax11 are exactly identical


IMPORTANT WARNING: Sequences tax8 and tax12 are exactly identical


IMPORTANT WARNING: Sequences tax8 and tax41 are exactly identical


IMPORTANT WARNING: Sequences tax9 and tax345 are exactly identical


IMPORTANT WARNING: Sequences tax25 and tax26 are exactly identical


IMPORTANT WARNING: Sequences tax28 and tax30 are exactly identical


IMPORTANT WARNING: Sequences tax37 and tax138 are exactly identical


IMPORTANT WARNING: Sequences tax44 and tax45 are exactly identical


IMPORTANT WARNING: Sequences tax44 and tax129 are exactly identical


IMPORTANT WARNING: Sequences tax84 and tax85 are exactly identical


IMPORTANT WARNING: Sequences tax88 and tax90 are exactly identical


IMPORTANT WARNING: Sequences tax127 and tax169 are exactly identical


IMPORTANT WARNING: Sequences tax127 and tax183 are exactly identical


IMPORTANT WARNING: Sequences tax127 and tax186 are exactly identical


IMPORTANT WARNING: Sequences tax127 and tax330 are exactly identical


IMPORTANT WARNING: Sequences tax131 and tax134 are exactly identical


IMPORTANT WARNING: Sequences tax140 and tax142 are exactly identical


IMPORTANT WARNING: Sequences tax140 and tax143 are exactly identical


IMPORTANT WARNING: Sequences tax140 and tax145 are exactly identical


IMPORTANT WARNING: Sequences tax160 and tax161 are exactly identical


IMPORTANT WARNING: Sequences tax224 and tax225 are exactly identical


IMPORTANT WARNING: Sequences tax224 and tax226 are exactly identical


IMPORTANT WARNING: Sequences tax224 and tax227 are exactly identical


IMPORTANT WARNING: Sequences tax224 and tax228 are exactly identical


IMPORTANT WARNING: Sequences tax238 and tax239 are exactly identical


IMPORTANT WARNING: Sequences tax244 and tax250 are exactly identical


IMPORTANT WARNING: Sequences tax246 and tax249 are exactly identical


IMPORTANT WARNING: Sequences tax246 and tax254 are exactly identical


IMPORTANT WARNING: Sequences tax252 and tax253 are exactly identical


IMPORTANT WARNING: Sequences tax252 and tax255 are exactly identical


IMPORTANT WARNING: Sequences tax262 and tax264 are exactly identical


IMPORTANT WARNING: Sequences tax262 and tax266 are exactly identical


IMPORTANT WARNING: Sequences tax269 and tax270 are exactly identical


IMPORTANT WARNING: Sequences tax271 and tax272 are exactly identical


IMPORTANT WARNING: Sequences tax281 and tax284 are exactly identical


IMPORTANT WARNING: Sequences tax282 and tax283 are exactly identical


IMPORTANT WARNING: Sequences tax285 and tax286 are exactly identical


IMPORTANT WARNING: Sequences tax307 and tax308 are exactly identical


IMPORTANT WARNING: Sequences tax365 and tax402 are exactly identical


IMPORTANT WARNING: Sequences tax367 and tax373 are exactly identical


IMPORTANT WARNING: Sequences tax372 and tax377 are exactly identical


IMPORTANT WARNING: Sequences tax375 and tax384 are exactly identical


IMPORTANT WARNING: Sequences tax375 and tax385 are exactly identical

IMPORTANT WARNING
Found 44 sequences that are exactly identical to other sequences in the alignment.
Normally they should be excluded from the analysis.

Just in case you might need it, an alignment file with 
sequence duplicates removed is printed to file /auto/dufayard/res/bigdatasets_raxml_nucl/nucleic_M3459_407x1707_2007.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 1071 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.030568

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
Empirical Base Frequencies:
pi(A): 0.346336 pi(C): 0.291574 pi(G): 0.115388 pi(T): 0.246702



22.789125 -19544.921712
46.182044 -19530.933964
130.175440 -19530.933244
319.225812 -19530.931397
622.738638 -19530.931156
1006.262315 -19530.930842
1027.517330 -19485.701426
1107.542982 -19467.147056
1147.747984 -19458.957151
1251.103243 -19449.379486
1319.859572 -19448.416089
1414.465510 -19447.880004
1539.307575 -19447.783145
1646.608609 -19447.686903
1895.009879 -19447.593862
2271.057903 -19447.593862
2604.407914 -19367.955604


Overall Time for 1 Inference 2604.899254
Likelihood   : -19367.955604


Parsimony starting tree written to:    /auto/dufayard/res/bigdatasets_raxml_nucl/./RAxML_parsimonyTree.nucleic_M3459_407x1707_2007.phy_RAXML
Final tree written to:                 /auto/dufayard/res/bigdatasets_raxml_nucl/./RAxML_result.nucleic_M3459_407x1707_2007.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/bigdatasets_raxml_nucl/./RAxML_log.nucleic_M3459_407x1707_2007.phy_RAXML
Execution information file written to: /auto/dufayard/res/bigdatasets_raxml_nucl/./RAxML_info.nucleic_M3459_407x1707_2007.phy_RAXML