IMPORTANT WARNING: Sequences tax653 and tax654 are exactly identical

IMPORTANT WARNING
Found 1 sequence that is exactly identical to other sequences in the alignment.
Normally they should be excluded from the analysis.

Just in case you might need it, an alignment file with 
sequence duplicates removed is printed to file /auto/dufayard/res/bigdatasets_raxml_nucl/nucleic_M3703_1566x915_2008.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 896 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.109099

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
Empirical Base Frequencies:
pi(A): 0.300948 pi(C): 0.169907 pi(G): 0.143635 pi(T): 0.385509



186.373589 -80597.000785
262.773637 -80261.337276
547.772785 -80149.130433
1220.324913 -80032.842163
2430.557251 -79900.510560
4099.021334 -79809.242264
4150.447546 -79737.655709
5508.305581 -79496.377426
6446.767320 -79411.679458
7148.925372 -79391.864980
7665.141578 -79372.967628
8043.943387 -79355.656879
8367.088245 -79353.699457
8584.929796 -79353.331848
9079.118994 -79334.309767
9531.849343 -79321.925041
9951.863834 -79320.926273
10322.218607 -79320.808491
10862.971555 -79317.309246
11421.178972 -79311.344899
11923.366933 -79310.734191
12307.279637 -79310.178614
12701.061373 -79309.775303
13056.481368 -79309.704715
13611.264619 -79308.729476
14092.940017 -79308.665489
14690.231224 -79308.619360
15851.403235 -79308.561999
18016.744380 -79302.987873
18566.679079 -79302.893265
18996.151663 -79302.857798
19536.697331 -79302.824711
21004.723182 -79300.031302
21637.417144 -79297.074025
22120.674490 -79294.449039
22507.048679 -79294.424736
23001.601924 -79294.401557
24467.030384 -79284.135457
25088.974759 -79282.503778
25530.439481 -79282.379504
25906.061769 -79282.358908
26391.978498 -79282.339571
27782.089353 -79282.321827
29959.303605 -79278.318139
30600.584140 -79273.376795
31039.112887 -79273.350557
31590.190582 -79273.330589
32865.222655 -79273.311284
34878.611093 -79272.592774
35406.020547 -79272.576464
36099.414919 -79272.562048
37363.333580 -79272.543917
39368.486569 -79272.543917
39616.379236 -79270.279414


Overall Time for 1 Inference 39616.440763
Likelihood   : -79270.279414


Parsimony starting tree written to:    /auto/dufayard/res/bigdatasets_raxml_nucl/./RAxML_parsimonyTree.nucleic_M3703_1566x915_2008.phy_RAXML
Final tree written to:                 /auto/dufayard/res/bigdatasets_raxml_nucl/./RAxML_result.nucleic_M3703_1566x915_2008.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/bigdatasets_raxml_nucl/./RAxML_log.nucleic_M3703_1566x915_2008.phy_RAXML
Execution information file written to: /auto/dufayard/res/bigdatasets_raxml_nucl/./RAxML_info.nucleic_M3703_1566x915_2008.phy_RAXML