IMPORTANT WARNING: Alignment column 796 contains only undetermined values which will be treated as missing data

IMPORTANT WARNING
Found 1 column that contains only undetermined values which will be treated as missing data.
Normally these columns should be excluded from the analysis.

Just in case you might need it, an alignment file with 
undetermined columns removed is printed to file /auto/dufayard/res/bigdatasets_raxml_nucl/nucleic_M3862_362x1207_2008.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 1028 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.107002

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
Empirical Base Frequencies:
pi(A): 0.340516 pi(C): 0.238259 pi(G): 0.180657 pi(T): 0.240568



35.596363 -96975.071325
54.999232 -96825.872490
116.348357 -96811.392031
273.600995 -95710.772469
369.192377 -95468.066743
455.037075 -95371.254235
540.805095 -95321.664071
613.317509 -95296.483421
675.866009 -95285.267372
734.541852 -95281.912925
794.237341 -95274.993632
853.166648 -95271.806346
969.474125 -95258.569407
1073.275425 -95256.739225
1175.340373 -95254.879941
1274.418333 -95253.350752
1375.495234 -95251.845572
1589.101058 -95250.187195
1883.815950 -95250.187195
2288.177752 -94851.466734


Overall Time for 1 Inference 2288.256879
Likelihood   : -94851.466734


Parsimony starting tree written to:    /auto/dufayard/res/bigdatasets_raxml_nucl/./RAxML_parsimonyTree.nucleic_M3862_362x1207_2008.phy_RAXML
Final tree written to:                 /auto/dufayard/res/bigdatasets_raxml_nucl/./RAxML_result.nucleic_M3862_362x1207_2008.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/bigdatasets_raxml_nucl/./RAxML_log.nucleic_M3862_362x1207_2008.phy_RAXML
Execution information file written to: /auto/dufayard/res/bigdatasets_raxml_nucl/./RAxML_info.nucleic_M3862_362x1207_2008.phy_RAXML