IMPORTANT WARNING: Sequences tax26 and tax70 are exactly identical


IMPORTANT WARNING: Sequences tax106 and tax108 are exactly identical

IMPORTANT WARNING
Found 2 sequences that are exactly identical to other sequences in the alignment.
Normally they should be excluded from the analysis.

Just in case you might need it, an alignment file with 
sequence duplicates removed is printed to file /auto/dufayard/res/bigdatasets_raxml_prot/proteic_M2624_139x348_2006.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 347 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.260088

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: AA
Substitution Matrix: WAG
Fixed Base Frequencies:
pi(A): 0.087000 pi(R): 0.044000 pi(N): 0.039000 pi(D): 0.057000 
pi(C): 0.019000 pi(Q): 0.037000 pi(E): 0.058000 pi(G): 0.083000 
pi(H): 0.024000 pi(I): 0.049000 pi(L): 0.086000 pi(K): 0.062000 
pi(M): 0.020000 pi(F): 0.038000 pi(P): 0.046000 pi(S): 0.070000 
pi(T): 0.061000 pi(W): 0.014000 pi(Y): 0.035000 pi(V): 0.071000 



49.556519 -12918.405881
162.621475 -12857.119296
437.016798 -12855.881668
910.601538 -12854.177036
1667.434350 -12842.531168
2123.054710 -12840.294277
2635.759459 -12840.139016
3096.373135 -12840.138545
3515.710618 -12840.138545
4016.173242 -12840.138545
4740.908209 -12840.138545
5599.675390 -12840.138545
5675.810530 -12840.115184


Overall Time for 1 Inference 5675.841087
Likelihood   : -12840.115184


Parsimony starting tree written to:    /auto/dufayard/res/bigdatasets_raxml_prot/./RAxML_parsimonyTree.proteic_M2624_139x348_2006.phy_RAXML
Final tree written to:                 /auto/dufayard/res/bigdatasets_raxml_prot/./RAxML_result.proteic_M2624_139x348_2006.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/bigdatasets_raxml_prot/./RAxML_log.proteic_M2624_139x348_2006.phy_RAXML
Execution information file written to: /auto/dufayard/res/bigdatasets_raxml_prot/./RAxML_info.proteic_M2624_139x348_2006.phy_RAXML
5674.77user 0.00system 1:34:35elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps