You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008 Alignment has 10843 distinct alignment patterns Proportion of gaps and completely undetermined characters in this alignment: 0.557676 RAxML rapid hill-climbing mode Executing 1 inference on the original alignment using a distinct randomized MP tree All free model parameters will be estimated by RAxML GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units Partition: 0 Name: No Name Provided DataType: AA Substitution Matrix: WAG Fixed Base Frequencies: pi(A): 0.087000 pi(R): 0.044000 pi(N): 0.039000 pi(D): 0.057000 pi(C): 0.019000 pi(Q): 0.037000 pi(E): 0.058000 pi(G): 0.083000 pi(H): 0.024000 pi(I): 0.049000 pi(L): 0.086000 pi(K): 0.062000 pi(M): 0.020000 pi(F): 0.038000 pi(P): 0.046000 pi(S): 0.070000 pi(T): 0.061000 pi(W): 0.014000 pi(Y): 0.035000 pi(V): 0.071000 644.174419 -435150.893957 2705.733861 -434886.756973 8695.841053 -434881.042718 16628.317223 -434825.163583 25135.130652 -434662.271166 44574.314728 -434553.649324 62172.946192 -434518.671333 79820.166736 -434505.527817 96881.268404 -434504.990909 109641.520739 -434504.990904 125304.235441 -434504.791883 136630.195358 -434504.641327 140160.476296 -434504.641327 141127.013510 -434503.847137 Overall Time for 1 Inference 141127.079228 Likelihood : -434503.847137 Parsimony starting tree written to: /auto/dufayard/res/bigdatasets_raxml_prot/./RAxML_parsimonyTree.proteic_M3756_77x11234_2008.phy_RAXML Final tree written to: /auto/dufayard/res/bigdatasets_raxml_prot/./RAxML_result.proteic_M3756_77x11234_2008.phy_RAXML Execution Log File written to: /auto/dufayard/res/bigdatasets_raxml_prot/./RAxML_log.proteic_M3756_77x11234_2008.phy_RAXML Execution information file written to: /auto/dufayard/res/bigdatasets_raxml_prot/./RAxML_info.proteic_M3756_77x11234_2008.phy_RAXML 140716.11user 0.00system 39:12:07elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps