.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : nucleic_M3459_407x1707_2007.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : GTR . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 1071 patterns found. (out of a total of 1707 sites) . 908 sites without polymorphism (53.19%). . Computing pairwise distances... . Building BioNJ tree... . WARNING: this analysis will use at least 233Mo of memory space... . Maximizing likelihood (using SPR moves)... . ( 23 sec) [ -21655.1675] [GTR parameters ] . ( 26 sec) [ -21419.0313] [Alpha ][ 0.500960] . ( 28 sec) [ -21411.8013] [ 3108] [depth= 1] . ( 29 sec) [ -21409.0764] [ 3107] [depth= 1] . ( 32 sec) [ -21409.0656] [ 3107] [depth= 3] . ( 34 sec) [ -21403.4985] [ 3106] [depth= 1] . ( 37 sec) [ -21402.8275] [ 3106] [depth= 1] . ( 38 sec) [ -21402.5907] [ 3106] [depth= 1] . ( 40 sec) [ -21402.5629] [ 3106] [depth= 1] . ( 42 sec) [ -21402.5038] [ 3106] [depth= 1] . ( 47 sec) [ -21401.9055] [ 3106] [depth= 1] . ( 47 sec) [ -21400.3177] [ 3106] [depth= 1] . ( 48 sec) [ -21392.7797] [ 3105] [depth= 2] . ( 49 sec) [ -21376.1045] [ 3103] [depth= 9] . ( 50 sec) [ -21346.3421] [ 3098] [depth= 6] . ( 51 sec) [ -21345.6540] [ 3098] [depth= 1] . ( 52 sec) [ -21345.3760] [ 3098] [depth= 1] . ( 55 sec) [ -21343.9618] [ 3098] [depth= 1] . ( 56 sec) [ -21343.3866] [ 3098] [depth= 1] . ( 57 sec) [ -21340.7233] [ 3098] [depth= 1] . ( 58 sec) [ -21340.6032] [ 3098] [depth= 1] . ( 63 sec) [ -21295.8141] [ 3089] [depth= 5] . ( 68 sec) [ -21294.3958] [ 3092] [depth= 3] . ( 69 sec) [ -21287.8028] [ 3092] [depth= 1] . ( 71 sec) [ -21280.7800] [ 3092] [depth= 1] . ( 72 sec) [ -21280.6620] [ 3092] [depth= 1] . ( 73 sec) [ -21280.6489] [ 3092] [depth= 1] . ( 74 sec) [ -21276.6290] [ 3092] [depth= 1] . ( 75 sec) [ -21275.6031] [ 3092] [depth= 1] . ( 79 sec) [ -21275.0715] [ 3092] [depth= 1] . ( 80 sec) [ -21269.5385] [ 3091] [depth= 1] . ( 81 sec) [ -21267.9176] [ 3091] [depth= 1] . ( 82 sec) [ -21266.1513] [ 3091] [depth= 1] . ( 83 sec) [ -21264.7785] [ 3091] [depth= 1] . ( 84 sec) [ -21264.6267] [ 3091] [depth= 4] . ( 86 sec) [ -21255.3937] [ 3090] [depth= 1] . ( 88 sec) [ -21255.3688] [ 3090] [depth= 2] . ( 89 sec) [ -21254.5684] [ 3090] [depth= 2] . ( 90 sec) [ -21253.1349] [ 3090] [depth= 1] . ( 91 sec) [ -21252.8930] [ 3090] [depth= 1] . ( 93 sec) [ -21252.7771] [ 3090] [depth= 1] . ( 94 sec) [ -21252.2706] [ 3090] [depth= 1] . ( 99 sec) [ -21252.1615] [ 3090] [depth= 2] . ( 100 sec) [ -21252.0877] [ 3090] [depth= 1] . ( 101 sec) [ -21251.9313] [ 3090] [depth= 1] . ( 107 sec) [ -21246.5934] [ 3089] [depth= 1] . ( 108 sec) [ -21246.5571] [ 3089] [depth= 2] . ( 110 sec) [ -21246.5428] [ 3089] [depth= 1] . ( 111 sec) [ -21245.2555] [ 3089] [depth= 2] . ( 114 sec) [ -21235.6434] [ 3087] [depth= 2] . ( 115 sec) [ -21228.3146] [ 3084] [depth= 4] . ( 116 sec) [ -21228.2607] [ 3084] [depth= 1] . ( 117 sec) [ -21228.2498] [ 3084] [depth= 1] . ( 118 sec) [ -21227.6451] [ 3084] [depth= 1] . ( 119 sec) [ -21225.1663] [ 3085] [depth= 2] . ( 123 sec) [ -21223.4341] [ 3086] [depth= 1] . ( 126 sec) [ -21216.5038] [ 3083] [depth= 3] . ( 127 sec) [ -21214.8487] [ 3083] [depth= 1] . ( 128 sec) [ -21213.8017] [ 3085] [depth= 3] . ( 131 sec) [ -21210.3092] [ 3085] [depth= 1] . ( 135 sec) [ -21210.2960] [ 3085] [depth= 4] . ( 137 sec) [ -21210.0965] [ 3085] [depth= 2] . ( 138 sec) [ -21204.8708] [ 3082] [depth= 1] . ( 139 sec) [ -21203.2316] [ 3082] [depth= 2] . ( 141 sec) [ -21183.5304] [ 3075] [depth= 2] . ( 143 sec) [ -21162.8666] [ 3069] [depth= 1] . ( 144 sec) [ -21157.5711] [ 3069] [depth= 5] . ( 144 sec) [ -21157.5457] [ 3069] [depth= 1] . ( 147 sec) [ -21143.9278] [ 3095] [depth= 1] . ( 151 sec) [ -21143.4046] [ 3095] [depth= 1] . ( 152 sec) [ -21143.0911] [ 3095] [depth= 1] . ( 155 sec) [ -21142.5978] [ 3095] [depth= 1] . ( 160 sec) [ -21142.5130] [ 3095] [depth= 1] . ( 165 sec) [ -21138.5581] [ 3094] [depth= 1] . ( 169 sec) [ -21136.0136] [ 3094] [depth= 1] . ( 170 sec) [ -21133.0305] [ 3094] [depth= 1] . ( 171 sec) [ -21132.7329] [ 3094] [depth= 1] . ( 172 sec) [ -21132.7082] [ 3094] [depth= 1] . ( 177 sec) [ -21132.6778] [ 3094] [depth= 2] . ( 177 sec) [ -21132.6632] [ 3094] [depth= 2] . ( 180 sec) [ -21130.8756] [ 3095] [depth= 2] . ( 181 sec) [ -21129.8994] [ 3095] [depth= 2] . ( 182 sec) [ -21106.2714] [ 3089] [depth= 1] . ( 191 sec) [ -21106.1057] [ 3089] [depth= 1] . ( 192 sec) [ -21106.0334] [ 3089] [depth= 1] . ( 193 sec) [ -21105.9972] [ 3089] [depth= 1] . ( 194 sec) [ -21105.9500] [ 3089] [depth= 3] . ( 195 sec) [ -21105.9271] [ 3089] [depth= 1] . ( 199 sec) [ -21090.2498] [ 3087] [depth= 2] . ( 200 sec) [ -21087.6662] [ 3088] [depth= 1] . ( 203 sec) [ -21078.5385] [ 3087] [depth= 2] . ( 204 sec) [ -21078.5188] [ 3088] [depth= 2] . ( 205 sec) [ -21075.1778] [ 3088] [depth= 1] . ( 206 sec) [ -21073.7607] [ 3088] [depth= 1] . ( 210 sec) [ -21073.7396] [ 3088] [depth= 1] . ( 211 sec) [ -21073.3051] [ 3088] [depth= 1] . ( 212 sec) [ -21070.3236] [ 3087] [depth= 2] . ( 213 sec) [ -21070.3056] [ 3087] [depth= 1] . ( 216 sec) [ -21070.1201] [ 3087] [depth= 1] . ( 221 sec) [ -21068.9420] [ 3087] [depth= 1] . ( 222 sec) [ -21067.7012] [ 3087] [depth= 1] . ( 223 sec) [ -21063.4346] [ 3087] [depth= 1] . ( 224 sec) [ -21050.6253] [ 3087] [depth= 3] . ( 225 sec) [ -21050.4071] [ 3087] [depth= 1] . ( 226 sec) [ -21050.1732] [ 3087] [depth= 1] . ( 227 sec) [ -21047.6278] [ 3086] [depth= 1] . ( 227 sec) [ -21047.1247] [ 3086] [depth= 1] . ( 228 sec) [ -21047.0375] [ 3086] [depth= 3] . ( 229 sec) [ -21040.6609] [ 3086] [depth= 2] . ( 230 sec) [ -21040.4716] [ 3086] [depth= 3] . ( 232 sec) [ -21038.6967] [ 3086] [depth= 1] . ( 233 sec) [ -21033.0682] [ 3084] [depth= 2] . ( 234 sec) [ -21032.4415] [ 3085] [depth= 2] . ( 239 sec) [ -21027.1511] [ 3084] [depth= 2] . ( 240 sec) [ -21026.3521] [ 3084] [depth= 1] . ( 241 sec) [ -21025.9175] [ 3084] [depth= 1] . ( 242 sec) [ -21025.6985] [ 3084] [depth= 1] . ( 243 sec) [ -21025.5886] [ 3084] [depth= 1] . ( 244 sec) [ -21025.5165] [ 3084] [depth= 2] . ( 249 sec) [ -21025.4821] [ 3084] [depth= 1] . ( 250 sec) [ -21025.4688] [ 3084] [depth= 1] . ( 252 sec) [ -21025.4535] [ 3084] [depth= 2] . ( 254 sec) [ -21024.4822] [ 3084] [depth= 2] . ( 255 sec) [ -21017.8314] [ 3083] [depth= 2] . ( 258 sec) [ -21017.7199] [ 3083] [depth= 1] . ( 260 sec) [ -21017.5383] [ 3083] [depth= 1] . ( 263 sec) [ -21014.0777] [ 3083] [depth= 2] . ( 264 sec) [ -21002.9199] [ 3081] [depth= 2] . ( 266 sec) [ -21001.2092] [ 3080] [depth= 1] . ( 267 sec) [ -20999.9231] [ 3081] [depth= 2] . ( 270 sec) [ -20999.9043] [ 3081] [depth= 1] . ( 271 sec) [ -20993.0731] [ 3081] [depth= 1] . ( 273 sec) [ -20990.6378] [ 3080] [depth= 1] . ( 275 sec) [ -20982.4027] [ 3054] [depth= 1] . ( 278 sec) [ -20982.0218] [ 3054] [depth= 2] . ( 279 sec) [ -20976.7651] [ 3056] [depth= 1] . ( 279 sec) [ -20969.8774] [ 3054] [depth= 1] . ( 280 sec) [ -20965.0426] [ 3052] [depth= 1] . ( 281 sec) [ -20963.4662] [ 3048] [depth= 1] . ( 282 sec) [ -20962.2246] [ 3052] [depth= 1] . ( 283 sec) [ -20959.6750] [ 3048] [depth= 1] . ( 284 sec) [ -20957.9200] [ 3050] [depth= 1] . ( 289 sec) [ -20957.8234] [ 3050] [depth= 1] . ( 290 sec) [ -20957.0471] [ 3050] [depth= 1] . ( 299 sec) [ -20944.3483] [ 3050] [depth= 1] . ( 300 sec) [ -20941.0434] [ 3050] [depth= 1] . ( 301 sec) [ -20940.5602] [ 3050] [depth= 1] . ( 302 sec) [ -20940.3505] [ 3050] [depth= 1] . ( 303 sec) [ -20940.2349] [ 3050] [depth= 1] . ( 304 sec) [ -20940.1865] [ 3050] [depth= 1] . ( 311 sec) [ -20937.8420] [ 3050] [depth= 2] . ( 312 sec) [ -20935.0995] [ 3050] [depth= 1] . ( 313 sec) [ -20935.0727] [ 3050] [depth= 1] . ( 314 sec) [ -20934.0538] [ 3050] [depth= 1] . ( 315 sec) [ -20933.4874] [ 3050] [depth= 1] . ( 319 sec) [ -20933.3931] [ 3050] [depth= 1] . ( 320 sec) [ -20933.3812] [ 3050] [depth= 1] . ( 323 sec) [ -20933.0150] [ 3050] [depth= 2] . ( 324 sec) [ -20932.3548] [ 3050] [depth= 2] . ( 336 sec) [ -20931.5539] [ 3050] [depth= 1] . ( 337 sec) [ -20931.3848] [ 3050] [depth= 1] . ( 338 sec) [ -20931.1835] [ 3050] [depth= 1] . ( 339 sec) [ -20931.0108] [ 3050] [depth= 1] . ( 340 sec) [ -20930.8453] [ 3050] [depth= 1] . ( 342 sec) [ -20928.3758] [ 3050] [depth= 1] . ( 345 sec) [ -20928.3313] [ 3050] [depth= 1] . ( 347 sec) [ -20927.0780] [ 3050] [depth= 1] . ( 348 sec) [ -20927.0128] [ 3050] [depth= 1] . ( 351 sec) [ -20926.2046] [ 3050] [depth= 1] . ( 352 sec) [ -20925.5915] [ 3050] [depth= 1] . ( 355 sec) [ -20924.3908] [ 3050] [depth= 1] . ( 356 sec) [ -20924.1731] [ 3050] [depth= 1] . ( 357 sec) [ -20924.0334] [ 3050] [depth= 1] . ( 358 sec) [ -20923.5367] [ 3050] [depth= 1] . ( 359 sec) [ -20922.7592] [ 3050] [depth= 2] . ( 360 sec) [ -20921.7284] [ 3050] [depth= 1] . ( 361 sec) [ -20921.0221] [ 3050] [depth= 1] . ( 362 sec) [ -20920.6983] [ 3050] [depth= 1] . ( 363 sec) [ -20916.3906] [ 3049] [depth= 1] . ( 364 sec) [ -20915.9317] [ 3049] [depth= 1] . ( 365 sec) [ -20915.5536] [ 3049] [depth= 1] . ( 366 sec) [ -20915.1059] [ 3049] [depth= 1] . ( 368 sec) [ -20914.6841] [ 3049] [depth= 2] . ( 369 sec) [ -20914.6738] [ 3049] [depth= 1] . ( 370 sec) [ -20914.4510] [ 3049] [depth= 1] . ( 371 sec) [ -20914.4346] [ 3049] [depth= 2] . ( 373 sec) [ -20914.4070] [ 3049] [depth= 1] . ( 375 sec) [ -20914.2830] [ 3049] [depth= 2] . ( 376 sec) [ -20914.1207] [ 3049] [depth= 1] . ( 378 sec) [ -20912.6473] [ 3049] [depth= 1] . ( 379 sec) [ -20912.1409] [ 3049] [depth= 2] . ( 389 sec) [ -20911.8460] [ 3049] [depth= 1] . ( 392 sec) [ -20911.2935] [ 3049] [depth= 2] . ( 395 sec) [ -20911.1274] [ 3049] [depth= 3] . ( 396 sec) [ -20910.7271] [ 3049] [depth= 1] . ( 397 sec) [ -20910.4152] [ 3049] [depth= 1] . ( 398 sec) [ -20909.8603] [ 3049] [depth= 1] . ( 400 sec) [ -20909.6173] [ 3049] [depth= 3] . ( 401 sec) [ -20909.5474] [ 3049] [depth= 2] . ( 404 sec) [ -20909.3240] [ 3049] [depth= 1] . ( 405 sec) [ -20909.3139] [ 3049] [depth= 2] . ( 412 sec) [ -20909.3024] [ 3049] [depth= 1] . ( 415 sec) [ -20903.6243] [ 3049] [depth= 1] . ( 417 sec) [ -20901.9550] [ 3049] [depth= 2] . ( 421 sec) [ -20898.7454] [ 3049] [depth= 1] . ( 423 sec) [ -20898.2435] [ 3049] [depth= 1] . ( 424 sec) [ -20897.9911] [ 3049] [depth= 2] . ( 425 sec) [ -20897.6084] [ 3049] [depth= 1] . ( 426 sec) [ -20897.4963] [ 3049] [depth= 2] . ( 430 sec) [ -20897.1278] [ 3049] [depth= 2] . ( 431 sec) [ -20897.1134] [ 3049] [depth= 1] . ( 435 sec) [ -20896.1806] [ 3049] [depth= 1] . ( 436 sec) [ -20896.1659] [ 3049] [depth= 2] . ( 437 sec) [ -20896.0245] [ 3049] [depth= 1] . ( 444 sec) [ -20894.2075] [ 3049] [depth= 3] . ( 445 sec) [ -20888.0864] [ 3048] [depth= 2] . ( 449 sec) [ -20887.8005] [ 3048] [depth= 1] . ( 455 sec) [ -20882.4553] [ 3047] [depth= 1] . ( 467 sec) [ -20880.1914] [ 3047] [depth= 1] . ( 468 sec) [ -20878.8246] [ 3046] [depth= 3] . ( 472 sec) [ -20876.7692] [ 3045] [depth= 1] . ( 476 sec) [ -20874.6467] [ 3046] [depth= 2] . ( 479 sec) [ -20873.5105] [ 3046] [depth= 1] . ( 481 sec) [ -20868.5075] [ 3044] [depth= 2] . ( 482 sec) [ -20868.3711] [ 3044] [depth= 2] . ( 483 sec) [ -20867.1685] [ 3044] [depth= 1] . ( 487 sec) [ -20866.0867] [ 3044] [depth= 1] . ( 488 sec) [ -20866.0602] [ 3044] [depth= 1] . ( 489 sec) [ -20860.3005] [ 3042] [depth= 2] . ( 491 sec) [ -20857.2578] [ 3041] [depth= 1] . ( 499 sec) [ -20854.3080] [ 3042] [depth= 1] . ( 500 sec) [ -20851.8249] [ 3042] [depth= 1] . ( 501 sec) [ -20845.4827] [ 3042] [depth= 1] . ( 503 sec) [ -20845.4492] [ 3042] [depth= 1] . ( 504 sec) [ -20842.4877] [ 3042] [depth= 1] . ( 511 sec) [ -20842.4409] [ 3042] [depth= 2] . ( 512 sec) [ -20842.1812] [ 3042] [depth= 1] . ( 513 sec) [ -20842.1352] [ 3042] [depth= 2] . ( 520 sec) [ -20841.6087] [ 3042] [depth= 1] . ( 521 sec) [ -20840.5980] [ 3042] [depth= 1] . ( 525 sec) [ -20839.8414] [ 3042] [depth= 1] . ( 526 sec) [ -20839.2667] [ 3042] [depth= 1] . ( 538 sec) [ -20839.2213] [ 3042] [depth= 1] . ( 539 sec) [ -20837.0500] [ 3042] [depth= 1] . ( 540 sec) [ -20837.0006] [ 3042] [depth= 1] . ( 542 sec) [ -20836.9737] [ 3042] [depth= 1] . ( 543 sec) [ -20836.9624] [ 3042] [depth= 1] . ( 544 sec) [ -20836.9194] [ 3042] [depth= 3] . ( 548 sec) [ -20834.6533] [ 3041] [depth= 1] . ( 558 sec) [ -20829.3292] [ 3040] [depth= 2] . ( 562 sec) [ -20828.9152] [ 3040] [depth= 1] . ( 563 sec) [ -20828.1340] [ 3040] [depth= 1] . ( 563 sec) [ -20827.3529] [ 3040] [depth= 1] . ( 566 sec) [ -20827.2059] [ 3040] [depth= 1] . ( 567 sec) [ -20826.2737] [ 3040] [depth= 1] . ( 578 sec) [ -20825.9878] [ 3040] [depth= 1] . ( 579 sec) [ -20825.2824] [ 3040] [depth= 1] . ( 580 sec) [ -20825.2390] [ 3040] [depth= 1] . ( 582 sec) [ -20825.0117] [ 3040] [depth= 2] . ( 582 sec) [ -20824.2061] [ 3040] [depth= 2] . ( 583 sec) [ -20823.6688] [ 3041] [depth= 1] . ( 584 sec) [ -20821.2907] [ 3040] [depth= 1] . ( 587 sec) [ -20821.0300] [ 3040] [depth= 1] . ( 589 sec) [ -20820.9962] [ 3040] [depth= 1] . ( 592 sec) [ -20820.9644] [ 3040] [depth= 1] . ( 593 sec) [ -20820.9524] [ 3040] [depth= 1] . ( 594 sec) [ -20820.9176] [ 3040] [depth= 1] . ( 595 sec) [ -20820.8345] [ 3040] [depth= 3] . ( 596 sec) [ -20820.8168] [ 3040] [depth= 1] . ( 601 sec) [ -20820.7433] [ 3040] [depth= 1] . ( 602 sec) [ -20820.7301] [ 3040] [depth= 1] . ( 618 sec) [ -20820.2627] [ 3040] [depth= 1] . ( 619 sec) [ -20816.0854] [ 3039] [depth= 1] . ( 621 sec) [ -20816.0699] [ 3039] [depth= 2] . ( 622 sec) [ -20816.0281] [ 3039] [depth= 1] . ( 623 sec) [ -20816.0109] [ 3039] [depth= 3] . ( 624 sec) [ -20815.9946] [ 3039] [depth= 1] . ( 634 sec) [ -20815.5504] [ 3039] [depth= 1] . ( 637 sec) [ -20815.3138] [ 3039] [depth= 1] . ( 640 sec) [ -20814.7818] [ 3039] [depth= 1] . ( 643 sec) [ -20814.7624] [ 3039] [depth= 1] . ( 644 sec) [ -20814.6740] [ 3039] [depth= 1] . ( 646 sec) [ -20814.0189] [ 3039] [depth= 1] . ( 650 sec) [ -20813.7247] [ 3039] [depth= 1] . ( 677 sec) [ -20813.4581] [ 3039] [depth= 1] . ( 678 sec) [ -20813.3575] [ 3039] [depth= 2] . ( 679 sec) [ -20813.2100] [ 3039] [depth= 2] . ( 680 sec) [ -20813.1968] [ 3039] [depth= 1] . ( 681 sec) [ -20812.7738] [ 3039] [depth= 1] . ( 683 sec) [ -20812.7571] [ 3039] [depth= 3] . ( 684 sec) [ -20812.5230] [ 3039] [depth= 1] . ( 685 sec) [ -20812.3529] [ 3039] [depth= 1] . ( 690 sec) [ -20812.3303] [ 3039] [depth= 3] . ( 691 sec) [ -20812.2867] [ 3039] [depth= 3] . ( 692 sec) [ -20812.2528] [ 3039] [depth= 6] . ( 699 sec) [ -20812.1494] [ 3039] [depth= 13] . ( 700 sec) [ -20812.0122] [ 3039] [depth= 2] . ( 702 sec) [ -20811.9783] [ 3039] [depth= 10] . ( 710 sec) [ -20811.9567] [ 3039] [depth= 9] . ( 720 sec) [ -20811.9444] [ 3039] [depth= 2] . ( 721 sec) [ -20811.9330] [ 3039] [depth= 5] . ( 725 sec) [ -20811.9220] [ 3039] [depth= 7] . ( 732 sec) [ -20811.9081] [ 3039] [depth= 1] . ( 746 sec) [ -20811.8952] [ 3039] [depth= 1] . ( 848 sec) [ -20728.4036] [Branch lengths ] . ( 890 sec) [ -19500.0453] [GTR parameters ] . ( 892 sec) [ -19422.5982] [Alpha ][ 0.289585] . ( 897 sec) [ -19422.5870] [ 3039] [depth= 3] . ( 918 sec) [ -19422.5717] [ 3039] [depth= 3] . ( 933 sec) [ -19422.5526] [ 3039] [depth= 2] . ( 940 sec) [ -19422.5321] [ 3039] [depth= 3] . ( 996 sec) [ -19422.2434] [ 3039] [depth= 1] . ( 1002 sec) [ -19421.9043] [ 3044] [depth= 1] . ( 1003 sec) [ -19421.8257] [ 3044] [depth= 5] . ( 1004 sec) [ -19421.5141] [ 3045] [depth= 1] . ( 1008 sec) [ -19420.0699] [ 3039] [depth= 1] . ( 1018 sec) [ -19420.0544] [ 3039] [depth= 1] . ( 1027 sec) [ -19418.1919] [ 3039] [depth= 1] . ( 1071 sec) [ -19418.1076] [ 3037] [depth= 2] . ( 1079 sec) [ -19417.1556] [ 3037] [depth= 2] . ( 1085 sec) [ -19416.8671] [ 3037] [depth= 1] . ( 1091 sec) [ -19416.7189] [ 3037] [depth= 1] . ( 1093 sec) [ -19416.6409] [ 3037] [depth= 1] . ( 1113 sec) [ -19401.3682] [ 3067] [depth= 1] . ( 1117 sec) [ -19396.5640] [ 3037] [depth= 1] . ( 1119 sec) [ -19395.1014] [ 3036] [depth= 1] . ( 1122 sec) [ -19394.2171] [ 3037] [depth= 1] . ( 1167 sec) [ -19394.1434] [ 3037] [depth= 2] . ( 1173 sec) [ -19394.1300] [ 3037] [depth= 1] . ( 1236 sec) [ -19394.0550] [ 3037] [depth= 1] . ( 1303 sec) [ -19394.0254] [ 3037] [depth= 2] . ( 1309 sec) [ -19393.8933] [ 3038] [depth= 1] . ( 1703 sec) [ -19380.6890] [Branch lengths ] . ( 1709 sec) [ -19380.4857] [GTR parameters ] . ( 1710 sec) [ -19380.2500] [Alpha ][ 0.281683] . ( 1728 sec) [ -19379.4896] [ 3039] [depth= 2] . ( 1842 sec) [ -19379.4743] [ 3039] [depth= 2] . ( 1907 sec) [ -19379.4115] [ 3039] [depth= 1] . ( 1909 sec) [ -19379.3906] [ 3039] [depth= 1] . ( 1936 sec) [ -19378.1087] [ 3038] [depth= 1] . ( 2531 sec) [ -19374.7795] [Branch lengths ] . ( 2592 sec) [ -19366.5517] [GTR parameters ] . ( 2594 sec) [ -19366.4737] [Alpha ][ 0.277335] . ( 2725 sec) [ -19366.4437] [ 3038] [depth= 3] . ( 2791 sec) [ -19366.4165] [ 3038] [depth= 1] . ( 3413 sec) [ -19365.0977] [Branch lengths ] . ( 3431 sec) [ -19365.0109] [GTR parameters ] . ( 3432 sec) [ -19365.0106] [Alpha ][ 0.277029] . ( 3564 sec) [ -19364.9997] [ 3038] [depth= 2] . ( 3629 sec) [ -19364.9630] [ 3038] [depth= 1] . ( 4249 sec) [ -19364.7827] [Branch lengths ] . ( 4282 sec) [ -19364.7631] [GTR parameters ] . ( 4283 sec) [ -19364.7607] [Alpha ][ 0.277793] . ( 5595 sec) [ -19364.7270] [Branch lengths ] . ( 5595 sec) [ -19364.7270] [Topology ] . ( 5627 sec) [ -19364.7213] [Topology ] . ( 5658 sec) [ -19364.7084] [Topology ] . ( 5689 sec) [ -19364.6982] [Topology ] . ( 5721 sec) [ -19364.6960] [Topology ] . ( 5752 sec) [ -19364.6954] [Topology ] . ( 5761 sec) [ -19364.6919] [GTR parameters ] . ( 5762 sec) [ -19364.6902] [Alpha ][ 0.278434] . ( 5763 sec) [ -19364.6902] [Topology ] . ( 5794 sec) [ -19364.6897] [Topology ] . ( 5807 sec) [ -19364.6865] [GTR parameters ] . ( 5809 sec) [ -19364.6865] [Alpha ][ 0.278434] . ( 5809 sec) [ -19364.6865] [Topology ] . ( 5841 sec) [ -19364.6864] [Topology ] . ( 5846 sec) [ -19364.6862] [GTR parameters ] . ( 5847 sec) [ -19364.6862] [Alpha ][ 0.278712] . Checking for NNIs, optimizing five branches... . ( 5966 sec) [ -19364.6108] [Topology ] . Checking for NNIs, optimizing five branches... . ( 6084 sec) [ -19364.6071] [Topology ] . Checking for NNIs, optimizing five branches... . ( 6203 sec) [ -19364.6068] [Topology ] . Checking for NNIs, optimizing five branches... . ( 6322 sec) [ -19364.6060] [Topology ] . Checking for NNIs, optimizing five branches... . ( 6440 sec) [ -19364.6050] [Topology ] . Checking for NNIs, optimizing five branches... . ( 6559 sec) [ -19364.6041] [Topology ] . Checking for NNIs, optimizing five branches... . ( 6678 sec) [ -19364.6030] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -19364.602962. . Printing the most likely tree in file 'nucleic_M3459_407x1707_2007.phy_phyml_tree.txt'... . Time used 1h53m18s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 6814.51user 0.00system 1:53:38elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps