.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : nucleic_M4056_408x9563_2008.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : GTR . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . 161 sites are made from completely undetermined states ('X', '-', '?' or 'N')... . Compressing sequences... . 7664 patterns found. (out of a total of 9563 sites) . 1604 sites without polymorphism (16.77%). . Computing pairwise distances... . Building BioNJ tree... . WARNING: this analysis requires at least 1669Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 203 sec) [ -220234.5143] [GTR parameters ] . ( 229 sec) [ -216982.4603] [Alpha ][ 0.500960] . ( 250 sec) [ -216950.9348] [47197] [depth= 2] . ( 262 sec) [ -216878.0389] [47168] [depth= 15] . ( 282 sec) [ -216851.9188] [47157] [depth= 8] . ( 293 sec) [ -216797.7243] [47157] [depth= 1] . ( 302 sec) [ -216792.4002] [47157] [depth= 1] . ( 310 sec) [ -216782.3672] [47150] [depth= 14] . ( 318 sec) [ -216710.6539] [47118] [depth= 4] . ( 331 sec) [ -216707.7156] [47115] [depth= 1] . ( 339 sec) [ -216678.9438] [47105] [depth= 7] . ( 352 sec) [ -216661.9949] [47105] [depth= 1] . ( 361 sec) [ -216658.2873] [47106] [depth= 5] . ( 369 sec) [ -216620.7503] [47088] [depth= 3] . ( 377 sec) [ -216597.0739] [47071] [depth= 4] . ( 393 sec) [ -216591.6589] [47069] [depth= 8] . ( 401 sec) [ -216588.6537] [47066] [depth= 2] . ( 409 sec) [ -216563.6732] [47065] [depth= 1] . ( 417 sec) [ -216544.9796] [47054] [depth= 9] . ( 426 sec) [ -216480.3627] [47042] [depth= 5] . ( 442 sec) [ -216322.6058] [46997] [depth= 2] . ( 454 sec) [ -216319.8833] [46999] [depth= 5] . ( 466 sec) [ -216224.9188] [46988] [depth= 3] . ( 474 sec) [ -216188.3676] [46979] [depth= 2] . ( 483 sec) [ -216173.9156] [46974] [depth= 1] . ( 503 sec) [ -216116.1690] [46953] [depth= 4] . ( 512 sec) [ -216105.4964] [46952] [depth= 2] . ( 520 sec) [ -216097.7029] [46949] [depth= 1] . ( 536 sec) [ -216094.2117] [46953] [depth= 1] . ( 547 sec) [ -216043.2943] [46938] [depth= 1] . ( 557 sec) [ -216035.1644] [46936] [depth= 1] . ( 569 sec) [ -215976.6427] [46940] [depth= 2] . ( 586 sec) [ -215967.6315] [46946] [depth= 1] . ( 595 sec) [ -215962.3363] [46950] [depth= 1] . ( 611 sec) [ -215954.5627] [46934] [depth= 5] . ( 623 sec) [ -215948.3896] [46936] [depth= 2] . ( 631 sec) [ -215927.1584] [46934] [depth= 4] . ( 640 sec) [ -215861.0707] [46908] [depth= 17] . ( 648 sec) [ -215753.9592] [46888] [depth= 3] . ( 653 sec) [ -215751.2167] [46884] [depth= 1] . ( 661 sec) [ -215709.8581] [46871] [depth= 6] . ( 677 sec) [ -215683.8686] [46864] [depth= 3] . ( 686 sec) [ -215646.0629] [46839] [depth= 10] . ( 694 sec) [ -215610.4460] [46821] [depth= 10] . ( 699 sec) [ -215597.2307] [46823] [depth= 2] . ( 707 sec) [ -215578.6391] [46822] [depth= 1] . ( 716 sec) [ -215528.9922] [46807] [depth= 1] . ( 724 sec) [ -215495.8871] [46797] [depth= 1] . ( 732 sec) [ -215304.9019] [46795] [depth= 15] . ( 741 sec) [ -215295.5089] [46791] [depth= 6] . ( 750 sec) [ -215295.3780] [46790] [depth= 10] . ( 763 sec) [ -215288.6716] [46789] [depth= 1] . ( 771 sec) [ -215230.5999] [46775] [depth= 10] . ( 779 sec) [ -215201.1960] [46775] [depth= 1] . ( 788 sec) [ -215187.0385] [46782] [depth= 2] . ( 796 sec) [ -215178.1372] [46779] [depth= 1] . ( 808 sec) [ -215159.4471] [46768] [depth= 2] . ( 816 sec) [ -215138.2222] [46772] [depth= 2] . ( 824 sec) [ -215094.6470] [46749] [depth= 4] . ( 830 sec) [ -215091.6835] [46749] [depth= 1] . ( 860 sec) [ -215089.1401] [46748] [depth= 1] . ( 869 sec) [ -215064.9723] [46751] [depth= 1] . ( 877 sec) [ -215028.9680] [46743] [depth= 2] . ( 892 sec) [ -215028.5953] [46740] [depth= 8] . ( 900 sec) [ -215019.8743] [46735] [depth= 1] . ( 910 sec) [ -215011.3142] [46733] [depth= 8] . ( 919 sec) [ -214965.4218] [46722] [depth= 12] . ( 931 sec) [ -214964.6588] [46722] [depth= 1] . ( 939 sec) [ -214940.0019] [46712] [depth= 2] . ( 954 sec) [ -214928.3123] [46710] [depth= 1] . ( 960 sec) [ -214903.0906] [46700] [depth= 2] . ( 969 sec) [ -214883.9844] [46695] [depth= 4] . ( 977 sec) [ -214868.3949] [46692] [depth= 9] . ( 986 sec) [ -214857.3278] [46696] [depth= 5] . ( 998 sec) [ -214845.3355] [46689] [depth= 10] . ( 1006 sec) [ -214741.0894] [46664] [depth= 5] . ( 1014 sec) [ -214739.5885] [46674] [depth= 1] . ( 1022 sec) [ -214693.0878] [46664] [depth= 1] . ( 1031 sec) [ -214691.2424] [46665] [depth= 4] . ( 1039 sec) [ -214681.1063] [46666] [depth= 1] . ( 1048 sec) [ -214680.9337] [46663] [depth= 4] . ( 1060 sec) [ -214670.0505] [46656] [depth= 1] . ( 1069 sec) [ -214646.8793] [46652] [depth= 12] . ( 1078 sec) [ -214607.3726] [46638] [depth= 1] . ( 1086 sec) [ -214592.2742] [46627] [depth= 5] . ( 1095 sec) [ -214579.8028] [46631] [depth= 2] . ( 1107 sec) [ -214565.0772] [46626] [depth= 2] . ( 1127 sec) [ -214454.2367] [46596] [depth= 11] . ( 1135 sec) [ -214423.3287] [46596] [depth= 9] . ( 1140 sec) [ -214421.8365] [46584] [depth= 3] . ( 1149 sec) [ -214388.9599] [46566] [depth= 14] . ( 1160 sec) [ -214346.7770] [46556] [depth= 5] . ( 1169 sec) [ -214346.7487] [46560] [depth= 1] . ( 1177 sec) [ -214278.4976] [46545] [depth= 2] . ( 1186 sec) [ -214276.5512] [46532] [depth= 1] . ( 1194 sec) [ -214184.9559] [46513] [depth= 6] . ( 1199 sec) [ -214180.2361] [46511] [depth= 3] . ( 1208 sec) [ -214162.1477] [46511] [depth= 1] . ( 1216 sec) [ -214159.2468] [46507] [depth= 2] . ( 1228 sec) [ -214131.5157] [46503] [depth= 1] . ( 1236 sec) [ -214110.2687] [46502] [depth= 1] . ( 1248 sec) [ -214093.7371] [46499] [depth= 2] . ( 1256 sec) [ -214011.1307] [46480] [depth= 3] . ( 1272 sec) [ -214009.0168] [46483] [depth= 1] . ( 1280 sec) [ -213999.2981] [46470] [depth= 5] . ( 1292 sec) [ -213941.5205] [46428] [depth= 2] . ( 1307 sec) [ -213921.1075] [46422] [depth= 1] . ( 1315 sec) [ -213919.3206] [46424] [depth= 2] . ( 1327 sec) [ -213902.9842] [46419] [depth= 1] . ( 1340 sec) [ -213893.2641] [46422] [depth= 1] . ( 1348 sec) [ -213886.0014] [46418] [depth= 1] . ( 1357 sec) [ -213874.8484] [46412] [depth= 1] . ( 1376 sec) [ -213871.8106] [46416] [depth= 6] . ( 1389 sec) [ -213809.0477] [46407] [depth= 5] . ( 1397 sec) [ -213795.1083] [46405] [depth= 2] . ( 1405 sec) [ -213746.0457] [46403] [depth= 2] . ( 1410 sec) [ -213742.4335] [46404] [depth= 1] . ( 1418 sec) [ -213720.2955] [46397] [depth= 2] . ( 1435 sec) [ -213608.8350] [46373] [depth= 6] . ( 1445 sec) [ -213586.3726] [46373] [depth= 2] . ( 1457 sec) [ -213580.7379] [46362] [depth= 1] . ( 1465 sec) [ -213566.2861] [46356] [depth= 1] . ( 1484 sec) [ -213516.4961] [46343] [depth= 4] . ( 1492 sec) [ -213489.1310] [46344] [depth= 1] . ( 1498 sec) [ -213484.0121] [46342] [depth= 1] . ( 1505 sec) [ -213479.3685] [46340] [depth= 1] . ( 1514 sec) [ -213449.2694] [46336] [depth= 1] . ( 1522 sec) [ -213392.9634] [46323] [depth= 5] . ( 1530 sec) [ -213381.2776] [46323] [depth= 1] . ( 1536 sec) [ -213372.1205] [46323] [depth= 1] . ( 1543 sec) [ -213346.6832] [46304] [depth= 6] . ( 1581 sec) [ -213298.5529] [46290] [depth= 6] . ( 1593 sec) [ -213275.2650] [46290] [depth= 1] . ( 1608 sec) [ -213269.6640] [46291] [depth= 1] . ( 1616 sec) [ -213255.5526] [46290] [depth= 1] . ( 1626 sec) [ -213236.6882] [46290] [depth= 3] . ( 1634 sec) [ -213218.3591] [46284] [depth= 4] . ( 1642 sec) [ -213214.7593] [46280] [depth= 3] . ( 1654 sec) [ -213188.6272] [46282] [depth= 1] . ( 1666 sec) [ -213181.7265] [46282] [depth= 1] . ( 1674 sec) [ -213027.4054] [46268] [depth= 2] . ( 1683 sec) [ -213023.5345] [46268] [depth= 1] . ( 1691 sec) [ -212983.5262] [46261] [depth= 2] . ( 1703 sec) [ -212974.5321] [46259] [depth= 2] . ( 1711 sec) [ -212972.8286] [46260] [depth= 2] . ( 1720 sec) [ -212967.9449] [46262] [depth= 1] . ( 1728 sec) [ -212967.7387] [46260] [depth= 1] . ( 1736 sec) [ -212952.9412] [46258] [depth= 1] . ( 1744 sec) [ -212875.3441] [46217] [depth= 5] . ( 1753 sec) [ -212862.9399] [46216] [depth= 2] . ( 1759 sec) [ -212860.1646] [46215] [depth= 1] . ( 1775 sec) [ -212802.9669] [46217] [depth= 1] . ( 1782 sec) [ -212799.0470] [46219] [depth= 1] . ( 1791 sec) [ -212781.7494] [46212] [depth= 1] . ( 1799 sec) [ -212732.3825] [46199] [depth= 5] . ( 1816 sec) [ -212731.5233] [46197] [depth= 1] . ( 1828 sec) [ -212730.5850] [46199] [depth= 2] . ( 1837 sec) [ -212730.5338] [46198] [depth= 1] . ( 1845 sec) [ -212685.8806] [46192] [depth= 2] . ( 1854 sec) [ -212643.6156] [46179] [depth= 2] . ( 1870 sec) [ -211759.4757] [46165] [depth= 16] . ( 1879 sec) [ -211753.8436] [46170] [depth= 2] . ( 1884 sec) [ -211750.9204] [46169] [depth= 1] . ( 1903 sec) [ -211726.3361] [46169] [depth= 1] . ( 1911 sec) [ -211708.4469] [46165] [depth= 3] . ( 1919 sec) [ -211707.0343] [46170] [depth= 1] . ( 1929 sec) [ -211680.9562] [46168] [depth= 1] . ( 1937 sec) [ -211661.9687] [46162] [depth= 2] . ( 1953 sec) [ -211652.4772] [46160] [depth= 1] . ( 1961 sec) [ -211648.3486] [46150] [depth= 2] . ( 1969 sec) [ -211645.9011] [46143] [depth= 2] . ( 1974 sec) [ -211645.6905] [46137] [depth= 1] . ( 1982 sec) [ -211539.4097] [46140] [depth= 1] . ( 1994 sec) [ -211536.9665] [46158] [depth= 2] . ( 2002 sec) [ -211245.7262] [46136] [depth= 2] . ( 2018 sec) [ -211205.6577] [46132] [depth= 2] . ( 2026 sec) [ -211144.2762] [46131] [depth= 4] . ( 2038 sec) [ -211142.3300] [46128] [depth= 1] . ( 2064 sec) [ -211058.5447] [46116] [depth= 15] . ( 2072 sec) [ -211053.4883] [46112] [depth= 2] . ( 2099 sec) [ -210998.6305] [46099] [depth= 6] . ( 2108 sec) [ -210876.2789] [46082] [depth= 12] . ( 2116 sec) [ -210534.8656] [46086] [depth= 4] . ( 2124 sec) [ -210491.0464] [46075] [depth= 3] . ( 2133 sec) [ -210490.4251] [46076] [depth= 1] . ( 2141 sec) [ -210449.7614] [46077] [depth= 1] . ( 2162 sec) [ -210443.7332] [46076] [depth= 3] . ( 2168 sec) [ -210439.3317] [46078] [depth= 1] . ( 2176 sec) [ -210401.1677] [46076] [depth= 2] . ( 2184 sec) [ -210399.5359] [46074] [depth= 1] . ( 2193 sec) [ -210382.3285] [46079] [depth= 13] . ( 2201 sec) [ -210347.7637] [46087] [depth= 2] . ( 2214 sec) [ -210303.8351] [46091] [depth= 2] . ( 2227 sec) [ -210302.6155] [46093] [depth= 1] . ( 2236 sec) [ -210202.3448] [46095] [depth= 4] . ( 2244 sec) [ -210199.4582] [46087] [depth= 1] . ( 2259 sec) [ -210178.8103] [46079] [depth= 1] . ( 2267 sec) [ -210041.7898] [46030] [depth= 26] . ( 2273 sec) [ -210029.4312] [46035] [depth= 1] . ( 2281 sec) [ -209888.6406] [45949] [depth= 22] . ( 2294 sec) [ -209807.1695] [45921] [depth= 3] . ( 2306 sec) [ -209772.5833] [45919] [depth= 21] . ( 2314 sec) [ -209744.5416] [45920] [depth= 21] . ( 2323 sec) [ -209709.3854] [45910] [depth= 10] . ( 2331 sec) [ -209637.3640] [45915] [depth= 10] . ( 2341 sec) [ -209509.1224] [45905] [depth= 1] . ( 2348 sec) [ -209373.8048] [45904] [depth= 5] . ( 2353 sec) [ -209271.0588] [45907] [depth= 1] . ( 2361 sec) [ -209212.3098] [45889] [depth= 10] . ( 2367 sec) [ -209011.8460] [45892] [depth= 2] . ( 2375 sec) [ -208620.4845] [45887] [depth= 1] . ( 2383 sec) [ -208559.5865] [45869] [depth= 6] . ( 2392 sec) [ -208514.3897] [45869] [depth= 1] . ( 2400 sec) [ -208497.6706] [45851] [depth= 1] . ( 2412 sec) [ -208479.1406] [45852] [depth= 1] . ( 2423 sec) [ -208447.1920] [45846] [depth= 2] . ( 2432 sec) [ -208420.7770] [45850] [depth= 1] . ( 2440 sec) [ -208367.5308] [45841] [depth= 8] . ( 2448 sec) [ -208213.8213] [45824] [depth= 10] . ( 2456 sec) [ -208156.1210] [45816] [depth= 3] . ( 2466 sec) [ -208155.1762] [45821] [depth= 4] . ( 2475 sec) [ -208075.2536] [45804] [depth= 4] . ( 2483 sec) [ -208047.3704] [45802] [depth= 1] . ( 2497 sec) [ -208002.8802] [45800] [depth= 14] . ( 2505 sec) [ -207965.2564] [45792] [depth= 8] . ( 2514 sec) [ -207963.2069] [45787] [depth= 1] . ( 2524 sec) [ -207907.8761] [45786] [depth= 11] . ( 2533 sec) [ -207901.6381] [45789] [depth= 4] . ( 2553 sec) [ -207864.4750] [45791] [depth= 1] . ( 2561 sec) [ -207852.5203] [45788] [depth= 1] . ( 2570 sec) [ -207845.8516] [45791] [depth= 1] . ( 2593 sec) [ -207755.4892] [45779] [depth= 8] . ( 2602 sec) [ -207749.8412] [45782] [depth= 2] . ( 2607 sec) [ -207732.7311] [45781] [depth= 4] . ( 2615 sec) [ -207730.8253] [45783] [depth= 1] . ( 2624 sec) [ -207697.9936] [45772] [depth= 5] . ( 2632 sec) [ -207581.4657] [45771] [depth= 1] . ( 2644 sec) [ -207562.2237] [45774] [depth= 1] . ( 2662 sec) [ -207550.9063] [45777] [depth= 1] . ( 2671 sec) [ -207463.9820] [45768] [depth= 7] . ( 2679 sec) [ -207387.6999] [45757] [depth= 4] . ( 2687 sec) [ -207337.8671] [45760] [depth= 2] . ( 2695 sec) [ -207310.2257] [45756] [depth= 3] . ( 2704 sec) [ -207306.9233] [45756] [depth= 1] . ( 2712 sec) [ -207304.8119] [45756] [depth= 1] . ( 2721 sec) [ -207272.4316] [45753] [depth= 1] . ( 2729 sec) [ -207222.6479] [45740] [depth= 11] . ( 2744 sec) [ -207146.6362] [45730] [depth= 17] . ( 2753 sec) [ -207074.7720] [45710] [depth= 17] . ( 2761 sec) [ -207070.1207] [45715] [depth= 3] . ( 2769 sec) [ -207012.4680] [45702] [depth= 2] . ( 2781 sec) [ -207009.2062] [45704] [depth= 6] . ( 2793 sec) [ -206998.3941] [45709] [depth= 1] . ( 2801 sec) [ -206965.7629] [45701] [depth= 4] . ( 2810 sec) [ -206308.9478] [45702] [depth= 1] . ( 2818 sec) [ -206247.2660] [45708] [depth= 1] . ( 2827 sec) [ -206167.2548] [45702] [depth= 1] . ( 2838 sec) [ -206070.3454] [45694] [depth= 7] . ( 2858 sec) [ -206058.6430] [45698] [depth= 1] . ( 2866 sec) [ -205820.1315] [45655] [depth= 14] . ( 2874 sec) [ -205812.7024] [45648] [depth= 1] . ( 2883 sec) [ -205789.8873] [45646] [depth= 5] . ( 2891 sec) [ -205771.4544] [45644] [depth= 1] . ( 2907 sec) [ -205763.4498] [45644] [depth= 1] . ( 2915 sec) [ -205755.7005] [45642] [depth= 1] . ( 2924 sec) [ -205752.1386] [45646] [depth= 1] . ( 2936 sec) [ -205692.6473] [45640] [depth= 3] . ( 2944 sec) [ -205670.8940] [45608] [depth= 7] . ( 2953 sec) [ -205612.9752] [45613] [depth= 2] . ( 2958 sec) [ -205602.4120] [45609] [depth= 1] . ( 2965 sec) [ -205592.0720] [45601] [depth= 2] . ( 2973 sec) [ -205520.5935] [45594] [depth= 1] . ( 2989 sec) [ -205516.1875] [45594] [depth= 1] . ( 2997 sec) [ -205501.3238] [45593] [depth= 1] . ( 3005 sec) [ -205465.0597] [45595] [depth= 1] . ( 3013 sec) [ -205423.3688] [45592] [depth= 2] . ( 3025 sec) [ -205376.0162] [45585] [depth= 7] . ( 3034 sec) [ -205346.3431] [45582] [depth= 2] . ( 3042 sec) [ -205346.0467] [45588] [depth= 1] . ( 3050 sec) [ -205272.5300] [45589] [depth= 1] . ( 3058 sec) [ -205172.0514] [45588] [depth= 1] . ( 3067 sec) [ -205156.2509] [45575] [depth= 7] . ( 3075 sec) [ -205151.4722] [45587] [depth= 1] . ( 3086 sec) [ -205116.1086] [45591] [depth= 1] . ( 3095 sec) [ -205109.4121] [45581] [depth= 2] . ( 3106 sec) [ -205043.0545] [45579] [depth= 1] . ( 3115 sec) [ -205035.8929] [45580] [depth= 1] . ( 3123 sec) [ -205034.2401] [45587] [depth= 1] . ( 3129 sec) [ -205020.2996] [45585] [depth= 1] . ( 3137 sec) [ -205017.2876] [45568] [depth= 2] . ( 3145 sec) [ -205016.7400] [45571] [depth= 1] . ( 3150 sec) [ -205010.1616] [45566] [depth= 1] . ( 3159 sec) [ -204968.1045] [45569] [depth= 2] . ( 3167 sec) [ -204967.5387] [45570] [depth= 1] . ( 3176 sec) [ -204964.0946] [45574] [depth= 2] . ( 3184 sec) [ -204296.5242] [45575] [depth= 1] . ( 3192 sec) [ -204291.6297] [45561] [depth= 22] . ( 3200 sec) [ -204246.4696] [45538] [depth= 16] . ( 3210 sec) [ -204237.7663] [45535] [depth= 1] . ( 3218 sec) [ -204184.2682] [45535] [depth= 1] . ( 3226 sec) [ -204118.5355] [45535] [depth= 1] . ( 3234 sec) [ -204066.1119] [45522] [depth= 15] . ( 3244 sec) [ -204055.0218] [45524] [depth= 1] . ( 3255 sec) [ -204042.0305] [45521] [depth= 5] . ( 3261 sec) [ -204029.6656] [45540] [depth= 1] . ( 3269 sec) [ -203970.3176] [45525] [depth= 5] . ( 3277 sec) [ -203929.5568] [45513] [depth= 3] . ( 3285 sec) [ -203898.6567] [45514] [depth= 1] . ( 3294 sec) [ -203897.7581] [45516] [depth= 1] . ( 3302 sec) [ -203890.7700] [45516] [depth= 2] . ( 3311 sec) [ -203868.8988] [45517] [depth= 1] . ( 3324 sec) [ -203868.2136] [45514] [depth= 1] . ( 3336 sec) [ -203829.4346] [45513] [depth= 1] . ( 3347 sec) [ -203626.7123] [45513] [depth= 1] . ( 3361 sec) [ -203572.4986] [45508] [depth= 1] . ( 3380 sec) [ -203568.6484] [45500] [depth= 3] . ( 3407 sec) [ -203549.3337] [45505] [depth= 1] . ( 3419 sec) [ -203545.9051] [45508] [depth= 2] . ( 3428 sec) [ -203544.7995] [45504] [depth= 1] . ( 3436 sec) [ -203539.5196] [45508] [depth= 1] . ( 3445 sec) [ -203493.3349] [45513] [depth= 1] . ( 3453 sec) [ -203481.2717] [45511] [depth= 2] . ( 3464 sec) [ -203474.2078] [45510] [depth= 1] . ( 3476 sec) [ -203471.9625] [45512] [depth= 1] . ( 3481 sec) [ -203469.9246] [45512] [depth= 2] . ( 3489 sec) [ -203418.4977] [45516] [depth= 6] . ( 3498 sec) [ -203412.1968] [45515] [depth= 1] . ( 3510 sec) [ -203387.7141] [45524] [depth= 1] . ( 3515 sec) [ -203381.4174] [45524] [depth= 1] . ( 3545 sec) [ -203236.3099] [45528] [depth= 2] . ( 3555 sec) [ -203218.7609] [45531] [depth= 1] . ( 3563 sec) [ -203215.5056] [45533] [depth= 1] . ( 3571 sec) [ -203204.4486] [45536] [depth= 1] . ( 3585 sec) [ -203186.7500] [45539] [depth= 1] . ( 3593 sec) [ -203177.4867] [45538] [depth= 1] . 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( 5974 sec) [ -195111.2079] [45092] [depth= 1] . ( 5983 sec) [ -195104.0420] [45091] [depth= 2] . ( 5995 sec) [ -195102.5996] [45090] [depth= 6] . ( 6003 sec) [ -195091.1002] [45086] [depth= 3] . ( 6011 sec) [ -195087.6915] [45089] [depth= 1] . ( 6021 sec) [ -195083.5909] [45085] [depth= 14] . ( 6030 sec) [ -195075.7210] [45084] [depth= 1] . ( 6038 sec) [ -195057.0737] [45088] [depth= 1] . ( 6057 sec) [ -195053.7042] [45093] [depth= 2] . ( 6068 sec) [ -195048.6388] [45089] [depth= 1] . ( 6076 sec) [ -195041.2862] [45087] [depth= 1] . ( 6082 sec) [ -194961.1045] [45091] [depth= 1] . ( 6091 sec) [ -194957.4373] [45094] [depth= 1] . ( 6100 sec) [ -194949.1152] [45096] [depth= 2] . ( 6114 sec) [ -194941.9667] [45094] [depth= 1] . ( 6119 sec) [ -194933.8361] [45095] [depth= 2] . ( 6128 sec) [ -194929.7143] [45097] [depth= 1] . ( 6135 sec) [ -194911.4622] [45098] [depth= 3] . ( 6143 sec) [ -194901.8380] [45098] [depth= 1] . ( 6152 sec) [ -194885.5827] [45097] [depth= 2] . ( 6158 sec) [ -194841.0386] [45102] [depth= 1] . ( 6170 sec) [ -194837.6494] [45103] [depth= 1] . ( 6179 sec) [ -194835.6031] [45103] [depth= 1] . ( 6188 sec) [ -194831.1578] [45107] [depth= 1] . ( 6196 sec) [ -194826.8095] [45107] [depth= 1] . ( 6208 sec) [ -194824.2576] [45111] [depth= 3] . ( 6217 sec) [ -194822.2302] [45108] [depth= 1] . ( 6224 sec) [ -194821.1268] [45104] [depth= 1] . ( 6237 sec) [ -194808.7064] [45106] [depth= 2] . ( 6245 sec) [ -194772.5194] [45106] [depth= 1] . ( 6258 sec) [ -194771.6808] [45106] [depth= 1] . ( 6264 sec) [ -194770.8467] [45103] [depth= 2] . ( 6274 sec) [ -194761.3145] [45103] [depth= 4] . ( 6283 sec) [ -194747.0310] [45108] [depth= 1] . ( 6292 sec) [ -194676.3934] [45107] [depth= 3] . ( 6297 sec) [ -194669.6744] [45110] [depth= 1] . ( 6306 sec) [ -194645.3070] [45105] [depth= 1] . ( 6322 sec) [ -194628.1603] [45109] [depth= 2] . ( 6336 sec) [ -194620.1972] [45108] [depth= 2] . ( 6341 sec) [ -194615.0787] [45107] [depth= 1] . ( 6349 sec) [ -194606.6629] [45113] [depth= 1] . ( 6358 sec) [ -194597.4347] [45117] [depth= 1] . ( 6363 sec) [ -194595.1649] [45117] [depth= 1] . ( 6371 sec) [ -194591.7783] [45111] [depth= 3] . ( 6377 sec) [ -194580.0506] [45109] [depth= 1] . ( 6385 sec) [ -194570.6601] [45113] [depth= 1] . ( 6393 sec) [ -194563.3555] [45095] [depth= 7] . ( 6401 sec) [ -194541.1805] [45094] [depth= 1] . ( 6413 sec) [ -194492.8031] [45087] [depth= 13] . ( 6421 sec) [ -194491.2005] [45085] [depth= 9] . ( 6429 sec) [ -194451.3723] [45084] [depth= 1] . ( 6439 sec) [ -194429.0396] [45080] [depth= 2] . ( 6446 sec) [ -194421.8021] [45084] [depth= 1] . ( 6454 sec) [ -194414.3669] [45086] [depth= 1] . ( 6461 sec) [ -194394.4425] [45079] [depth= 3] . ( 6467 sec) [ -194392.8384] [45083] [depth= 2] . ( 6475 sec) [ -194388.9098] [45081] [depth= 6] . ( 6485 sec) [ -194388.2938] [45082] [depth= 1] . ( 6491 sec) [ -194384.1136] [45084] [depth= 1] . ( 6504 sec) [ -194382.6730] [45089] [depth= 3] . ( 6512 sec) [ -194336.9218] [45089] [depth= 7] . ( 6517 sec) [ -194334.1157] [45087] [depth= 1] . ( 6526 sec) [ -194325.9305] [45083] [depth= 1] . ( 6532 sec) [ -194325.9185] [45078] [depth= 1] . ( 6545 sec) [ -194320.6953] [45075] [depth= 1] . ( 6554 sec) [ -194316.7123] [45072] [depth= 1] . ( 6560 sec) [ -194315.9554] [45075] [depth= 1] . ( 6569 sec) [ -194315.0472] [45080] [depth= 1] . ( 6578 sec) [ -194312.8947] [45085] [depth= 1] . ( 6587 sec) [ -194280.6203] [45090] [depth= 1] . ( 6595 sec) [ -194238.7900] [45093] [depth= 10] . ( 6650 sec) [ -188978.2268] [Branch lengths ] . ( 6826 sec) [ -188774.5797] [GTR parameters ] . ( 6841 sec) [ -188638.8669] [Alpha ][ 0.621626] . ( 6854 sec) [ -188622.9671] [45101] [depth= 1] . ( 6862 sec) [ -188591.7930] [45093] [depth= 1] . ( 6871 sec) [ -188587.6798] [45092] [depth= 1] . ( 6893 sec) [ -188579.8763] [45089] [depth= 3] . ( 6905 sec) [ -188548.6274] [45090] [depth= 1] . ( 6916 sec) [ -188541.0443] [45097] [depth= 3] . ( 6928 sec) [ -188541.0058] [45097] [depth= 1] . ( 6941 sec) [ -188528.2484] [45091] [depth= 5] . ( 6958 sec) [ -188527.0911] [45095] [depth= 1] . ( 7005 sec) [ -188518.6478] [45091] [depth= 1] . ( 7027 sec) [ -188507.8796] [45092] [depth= 1] . ( 7042 sec) [ -188502.0801] [45089] [depth= 2] . ( 7135 sec) [ -188501.4963] [45085] [depth= 1] . ( 7147 sec) [ -188496.6651] [45083] [depth= 5] . ( 7209 sec) [ -188495.8305] [45085] [depth= 1] . ( 7229 sec) [ -188487.6476] [45084] [depth= 1] . ( 7251 sec) [ -188430.9810] [45064] [depth= 3] . ( 7259 sec) [ -188424.1883] [45063] [depth= 2] . ( 7320 sec) [ -188416.2757] [45063] [depth= 1] . ( 7326 sec) [ -188380.5759] [45056] [depth= 6] . ( 7347 sec) [ -188377.0841] [45055] [depth= 1] . ( 7365 sec) [ -188374.6321] [45057] [depth= 1] . ( 7373 sec) [ -188363.8194] [45056] [depth= 4] . ( 7385 sec) [ -188357.6655] [45058] [depth= 1] . ( 7404 sec) [ -188352.6240] [45054] [depth= 2] . ( 7417 sec) [ -188351.6478] [45055] [depth= 1] . ( 7425 sec) [ -188343.6621] [45053] [depth= 1] . ( 7434 sec) [ -188323.6278] [45051] [depth= 3] . ( 7444 sec) [ -188323.3057] [45053] [depth= 1] . ( 7452 sec) [ -188304.2689] [45043] [depth= 1] . ( 7460 sec) [ -188300.7169] [45039] [depth= 3] . ( 7494 sec) [ -188293.1339] [45038] [depth= 1] . ( 7527 sec) [ -188285.3357] [45041] [depth= 3] . ( 7535 sec) [ -188271.6360] [45038] [depth= 1] . ( 7555 sec) [ -188271.5149] [45039] [depth= 1] . ( 7595 sec) [ -188269.8900] [45044] [depth= 1] . ( 7613 sec) [ -188266.0338] [45047] [depth= 4] . ( 7646 sec) [ -188265.9014] [45046] [depth= 1] . ( 7655 sec) [ -188259.2229] [45047] [depth= 1] . ( 7664 sec) [ -188254.1313] [45047] [depth= 1] . ( 7691 sec) [ -188252.6802] [45052] [depth= 1] . ( 7699 sec) [ -188251.8067] [45055] [depth= 1] . ( 7733 sec) [ -188250.4614] [45055] [depth= 1] . ( 7745 sec) [ -188244.4210] [45058] [depth= 1] . ( 7777 sec) [ -188232.0390] [45063] [depth= 1] . ( 7791 sec) [ -188225.6678] [45060] [depth= 2] . ( 7827 sec) [ -188221.5916] [45060] [depth= 1] . ( 7861 sec) [ -188221.0562] [45056] [depth= 1] . ( 7907 sec) [ -188218.8389] [45055] [depth= 1] . ( 7916 sec) [ -188215.2981] [45056] [depth= 1] . ( 7929 sec) [ -188211.6698] [45055] [depth= 1] . ( 7939 sec) [ -188209.1588] [45057] [depth= 1] . ( 7948 sec) [ -188185.5841] [45054] [depth= 4] . ( 8081 sec) [ -188185.5544] [45056] [depth= 1] . ( 8090 sec) [ -188180.1406] [45053] [depth= 1] . ( 8144 sec) [ -188179.9965] [45054] [depth= 1] . ( 8164 sec) [ -188179.7971] [45052] [depth= 1] . ( 8172 sec) [ -188179.1643] [45053] [depth= 1] . ( 8181 sec) [ -188177.8890] [45051] [depth= 1] . ( 8189 sec) [ -188177.2270] [45051] [depth= 1] . ( 8221 sec) [ -188176.1883] [45053] [depth= 1] . ( 8251 sec) [ -188173.0518] [45052] [depth= 6] . ( 8269 sec) [ -188172.6774] [45054] [depth= 1] . ( 8278 sec) [ -188171.5787] [45058] [depth= 1] . ( 8293 sec) [ -188167.2812] [45058] [depth= 3] . ( 8319 sec) [ -188162.3055] [45059] [depth= 1] . ( 8329 sec) [ -188159.0673] [45055] [depth= 1] . ( 8355 sec) [ -188145.8545] [45048] [depth= 1] . ( 8373 sec) [ -188140.0144] [45052] [depth= 1] . ( 8387 sec) [ -188138.2810] [45054] [depth= 1] . ( 8447 sec) [ -188135.0989] [45048] [depth= 1] . ( 8469 sec) [ -188126.0107] [45038] [depth= 1] . ( 8527 sec) [ -188118.5649] [45039] [depth= 1] . ( 8537 sec) [ -188117.7742] [45043] [depth= 1] . ( 8545 sec) [ -188116.9562] [45048] [depth= 1] . ( 8581 sec) [ -188115.4396] [45042] [depth= 1] . ( 8595 sec) [ -188111.4121] [45043] [depth= 1] . ( 8604 sec) [ -188108.9229] [45042] [depth= 34] . ( 8632 sec) [ -188106.2505] [45038] [depth= 6] . ( 8649 sec) [ -188091.8042] [45037] [depth= 7] . ( 8691 sec) [ -188089.1234] [45031] [depth= 2] . ( 8703 sec) [ -188085.3346] [45028] [depth= 1] . ( 8711 sec) [ -188081.7607] [45028] [depth= 1] . ( 8759 sec) [ -188078.0297] [45032] [depth= 5] . ( 8772 sec) [ -188076.0192] [45019] [depth= 1] . ( 8782 sec) [ -188074.4768] [45021] [depth= 1] . ( 8802 sec) [ -188072.2397] [45019] [depth= 1] . ( 8809 sec) [ -188071.8131] [45018] [depth= 1] . ( 8824 sec) [ -188069.8250] [45018] [depth= 1] . ( 8832 sec) [ -188065.9428] [45017] [depth= 1] . ( 8846 sec) [ -188065.8180] [45017] [depth= 1] . ( 8873 sec) [ -188059.9289] [45011] [depth= 1] . ( 8882 sec) [ -188052.4093] [45010] [depth= 1] . ( 8894 sec) [ -188052.0621] [45010] [depth= 1] . ( 8903 sec) [ -188051.0264] [45010] [depth= 1] . ( 8911 sec) [ -188014.1456] [45000] [depth= 3] . ( 8926 sec) [ -188008.0238] [45001] [depth= 3] . ( 8948 sec) [ -187988.0495] [45006] [depth= 27] . ( 8956 sec) [ -187974.8770] [45004] [depth= 1] . ( 9007 sec) [ -187974.7388] [45004] [depth= 4] . ( 9019 sec) [ -187974.2161] [45005] [depth= 1] . ( 9046 sec) [ -187965.2889] [44996] [depth= 2] . ( 9065 sec) [ -187960.9184] [44999] [depth= 1] . ( 9073 sec) [ -187950.0225] [44990] [depth= 2] . ( 9093 sec) [ -187948.6316] [44995] [depth= 1] . ( 9155 sec) [ -187935.9095] [44991] [depth= 1] . ( 9168 sec) [ -187934.8161] [44982] [depth= 3] . ( 9176 sec) [ -187931.3071] [44975] [depth= 7] . ( 9184 sec) [ -187930.0457] [44974] [depth= 1] . ( 9205 sec) [ -187840.0638] [44962] [depth= 16] . ( 9240 sec) [ -187839.1206] [44962] [depth= 1] . ( 9259 sec) [ -187835.2687] [44964] [depth= 1] . ( 9267 sec) [ -187835.2105] [44962] [depth= 1] . ( 9296 sec) [ -187830.7408] [44961] [depth= 1] . ( 9318 sec) [ -187780.0620] [44955] [depth= 22] . ( 9340 sec) [ -187779.4488] [44955] [depth= 1] . ( 9353 sec) [ -187778.8340] [44956] [depth= 2] . ( 9378 sec) [ -187777.6414] [44953] [depth= 1] . ( 9386 sec) [ -187776.3256] [44947] [depth= 1] . ( 9402 sec) [ -187774.3734] [44946] [depth= 1] . ( 9414 sec) [ -187770.0596] [44946] [depth= 1] . ( 9443 sec) [ -187768.0983] [44951] [depth= 1] . ( 9461 sec) [ -187725.9001] [44948] [depth= 9] . ( 9475 sec) [ -187724.5657] [44929] [depth= 2] . ( 9500 sec) [ -187720.8494] [44928] [depth= 1] . ( 9546 sec) [ -187720.1416] [44930] [depth= 1] . ( 9564 sec) [ -187717.8859] [44930] [depth= 3] . ( 9581 sec) [ -187707.1163] [44932] [depth= 10] . ( 9592 sec) [ -187702.9355] [44929] [depth= 1] . ( 9637 sec) [ -187701.6182] [44932] [depth= 1] . ( 9668 sec) [ -187699.8756] [44930] [depth= 1] . ( 9687 sec) [ -187695.5588] [44925] [depth= 5] . ( 9695 sec) [ -187680.5323] [44919] [depth= 2] . ( 9720 sec) [ -187665.1255] [44920] [depth= 1] . ( 9728 sec) [ -187664.7497] [44914] [depth= 1] . ( 9736 sec) [ -187653.1859] [44908] [depth= 1] . ( 9785 sec) [ -187650.1462] [44906] [depth= 1] . ( 9794 sec) [ -187648.4473] [44900] [depth= 1] . ( 9802 sec) [ -187648.2427] [44900] [depth= 1] . ( 9808 sec) [ -187642.2080] [44896] [depth= 1] . ( 9847 sec) [ -187635.5833] [44893] [depth= 1] . ( 9911 sec) [ -187629.0081] [44889] [depth= 1] . ( 9946 sec) [ -187622.7939] [44891] [depth= 4] . ( 9958 sec) [ -187620.7708] [44892] [depth= 1] . ( 9974 sec) [ -187619.7691] [44894] [depth= 1] . ( 9986 sec) [ -187618.0884] [44892] [depth= 1] . ( 9994 sec) [ -187617.8865] [44892] [depth= 1] . (10003 sec) [ -187617.5449] [44893] [depth= 1] . (10011 sec) [ -187615.8632] [44892] [depth= 1] . (10034 sec) [ -187615.6692] [44891] [depth= 1] . (10057 sec) [ -187613.3586] [44897] [depth= 1] . (10076 sec) [ -187604.7440] [44890] [depth= 10] . (10096 sec) [ -187603.9819] [44893] [depth= 1] . (10104 sec) [ -187602.5700] [44890] [depth= 1] . (10138 sec) [ -187601.1400] [44892] [depth= 1] . (10148 sec) [ -187594.3297] [44895] [depth= 2] . (10164 sec) [ -187593.3437] [44899] [depth= 1] . (10173 sec) [ -187575.2161] [44891] [depth= 5] . (10186 sec) [ -187573.5176] [44896] [depth= 1] . (10202 sec) [ -187557.2393] [44890] [depth= 1] . (10240 sec) [ -187555.0002] [44892] [depth= 2] . (10293 sec) [ -187553.5769] [44880] [depth= 4] . (10335 sec) [ -187543.4500] [44873] [depth= 3] . (10344 sec) [ -187540.2493] [44870] [depth= 2] . (10353 sec) [ -187534.3592] [44866] [depth= 1] . (10368 sec) [ -187528.9526] [44865] [depth= 1] . (10392 sec) [ -187527.3725] [44867] [depth= 3] . (10400 sec) [ -187507.3264] [44850] [depth= 17] . (10408 sec) [ -187501.3725] [44848] [depth= 1] . (10416 sec) [ -187501.2291] [44847] [depth= 4] . (10438 sec) [ -187493.9637] [44840] [depth= 2] . (10446 sec) [ -187492.7169] [44845] [depth= 1] . (10460 sec) [ -187477.6218] [44835] [depth= 12] . (10469 sec) [ -187468.9598] [44833] [depth= 1] . (10496 sec) [ -187463.1340] [44827] [depth= 2] . (10513 sec) [ -187455.2358] [44830] [depth= 2] . (10532 sec) [ -187451.2162] [44830] [depth= 5] . (10546 sec) [ -187446.5422] [44828] [depth= 2] . (10555 sec) [ -187423.2420] [44829] [depth= 1] . (10564 sec) [ -187422.6870] [44829] [depth= 1] . (10572 sec) [ -187418.2360] [44827] [depth= 1] . (10581 sec) [ -187417.2402] [44826] [depth= 1] . (10591 sec) [ -187414.4947] [44827] [depth= 1] . (10600 sec) [ -187413.0683] [44831] [depth= 2] . (10608 sec) [ -187400.6591] [44823] [depth= 16] . (10620 sec) [ -187390.3103] [44820] [depth= 15] . (10650 sec) [ -187385.2989] [44817] [depth= 1] . (10661 sec) [ -187382.1026] [44817] [depth= 3] . (10670 sec) [ -187380.7213] [44820] [depth= 1] . (10678 sec) [ -187379.9893] [44815] [depth= 1] . (10690 sec) [ -187372.8674] [44816] [depth= 1] . (10725 sec) [ -187371.7211] [44816] [depth= 1] . (10733 sec) [ -187370.9153] [44820] [depth= 2] . (10769 sec) [ -187364.9738] [44813] [depth= 3] . (10823 sec) [ -187357.1210] [44808] [depth= 3] . (10862 sec) [ -187356.2597] [44807] [depth= 1] . (10871 sec) [ -187355.2426] [44808] [depth= 1] . (10879 sec) [ -187354.5291] [44808] [depth= 1] . (10898 sec) [ -187353.1924] [44808] [depth= 1] . (10948 sec) [ -187351.5786] [44813] [depth= 1] . (10956 sec) [ -187349.4179] [44795] [depth= 2] . (10969 sec) [ -187348.6807] [44795] [depth= 1] . (10988 sec) [ -187340.8886] [44797] [depth= 2] . (10996 sec) [ -187330.2925] [44794] [depth= 1] . (11015 sec) [ -187326.6154] [44795] [depth= 3] . (11021 sec) [ -187321.7523] [44798] [depth= 2] . (11029 sec) [ -187321.2693] [44798] [depth= 1] . (11038 sec) [ -187319.7005] [44800] [depth= 1] . (11092 sec) [ -187317.6223] [44798] [depth= 1] . (11122 sec) [ -187311.4134] [44789] [depth= 6] . (11131 sec) [ -187305.6331] [44789] [depth= 2] . (11145 sec) [ -187300.9188] [44787] [depth= 1] . (11166 sec) [ -187299.4858] [44789] [depth= 1] . (11176 sec) [ -187287.3758] [44785] [depth= 2] . (11223 sec) [ -187286.5327] [44786] [depth= 1] . (11240 sec) [ -187284.1014] [44791] [depth= 1] . (11261 sec) [ -187283.1949] [44789] [depth= 1] . (11269 sec) [ -187278.7071] [44791] [depth= 1] . (11277 sec) [ -187275.6347] [44790] [depth= 2] . (11291 sec) [ -187270.3873] [44785] [depth= 1] . (11299 sec) [ -187268.6710] [44788] [depth= 11] . (11331 sec) [ -187259.5904] [44787] [depth= 3] . (11339 sec) [ -187256.5814] [44789] [depth= 5] . (11348 sec) [ -187254.6222] [44787] [depth= 1] . (11375 sec) [ -187244.5178] [44790] [depth= 1] . (11383 sec) [ -187240.3067] [44791] [depth= 1] . (11398 sec) [ -187239.9796] [44789] [depth= 2] . (11410 sec) [ -187239.6706] [44792] [depth= 1] . (11418 sec) [ -187228.9648] [44790] [depth= 1] . (11427 sec) [ -187227.5697] [44785] [depth= 1] . (11435 sec) [ -187222.2005] [44783] [depth= 1] . (11467 sec) [ -187218.3466] [44781] [depth= 1] . (11522 sec) [ -187214.5938] [44782] [depth= 2] . (11532 sec) [ -187211.9645] [44786] [depth= 6] . (11566 sec) [ -187210.9328] [44786] [depth= 1] . (11585 sec) [ -187208.3014] [44787] [depth= 1] . (11593 sec) [ -187207.3199] [44786] [depth= 1] . (11634 sec) [ -187206.4776] [44784] [depth= 1] . (11668 sec) [ -187203.1038] [44787] [depth= 3] . (11686 sec) [ -187200.6563] [44785] [depth= 1] . (11704 sec) [ -187198.8829] [44782] [depth= 1] . (11712 sec) [ -187192.1570] [44785] [depth= 2] . (11723 sec) [ -187190.2497] [44787] [depth= 1] . (11731 sec) [ -187174.8983] [44780] [depth= 8] . (11739 sec) [ -187171.6457] [44780] [depth= 1] . (11760 sec) [ -187166.7108] [44780] [depth= 1] . (11769 sec) [ -187166.4796] [44778] [depth= 1] . (11833 sec) [ -187164.7337] [44783] [depth= 2] . (11864 sec) [ -187160.8431] [44778] [depth= 3] . (11892 sec) [ -187158.4772] [44776] [depth= 2] . (11933 sec) [ -187156.5290] [44776] [depth= 1] . (11954 sec) [ -187155.9530] [44777] [depth= 1] . (11978 sec) [ -187154.8104] [44775] [depth= 1] . (11987 sec) [ -187151.4804] [44776] [depth= 1] . (12052 sec) [ -187151.3007] [44776] [depth= 1] . (12073 sec) [ -187150.1101] [44778] [depth= 4] . (12089 sec) [ -187137.7509] [44783] [depth= 16] . (12098 sec) [ -187133.6670] [44786] [depth= 2] . (12113 sec) [ -187133.1171] [44788] [depth= 3] . (12124 sec) [ -187131.8404] [44788] [depth= 2] . (12155 sec) [ -187130.7648] [44791] [depth= 1] . (12224 sec) [ -187127.8359] [44791] [depth= 1] . (12251 sec) [ -187125.8054] [44793] [depth= 1] . (12259 sec) [ -187120.0918] [44796] [depth= 1] . (12282 sec) [ -187119.1957] [44797] [depth= 1] . (12290 sec) [ -187118.2552] [44800] [depth= 1] . (12296 sec) [ -187117.9703] [44801] [depth= 2] . (12308 sec) [ -187113.0869] [44802] [depth= 2] . (12319 sec) [ -187090.4744] [44796] [depth= 2] . (12367 sec) [ -187084.3826] [44788] [depth= 8] . (12417 sec) [ -187080.7366] [44784] [depth= 1] . (12427 sec) [ -187080.6259] [44786] [depth= 2] . (12436 sec) [ -187077.1735] [44789] [depth= 1] . (12456 sec) [ -187067.2704] [44790] [depth= 1] . (12512 sec) [ -187065.5935] [44786] [depth= 1] . (12518 sec) [ -187057.5599] [44780] [depth= 2] . (12539 sec) [ -187027.1501] [44781] [depth= 3] . (12586 sec) [ -187026.5014] [44781] [depth= 3] . (12615 sec) [ -187025.7404] [44786] [depth= 1] . (12631 sec) [ -187025.1695] [44784] [depth= 1] . (12680 sec) [ -187016.6174] [44785] [depth= 1] . (12688 sec) [ -187011.8904] [44784] [depth= 2] . (12731 sec) [ -187008.4176] [44783] [depth= 2] . (12740 sec) [ -187008.2135] [44778] [depth= 1] . (12754 sec) [ -187004.6049] [44780] [depth= 1] . (12773 sec) [ -187003.1354] [44782] [depth= 1] . (12804 sec) [ -187001.6613] [44780] [depth= 1] . (12870 sec) [ -186999.5246] [44782] [depth= 1] . (12925 sec) [ -185938.9597] [Branch lengths ] . (13183 sec) [ -185934.7142] [GTR parameters ] . (13196 sec) [ -185933.2602] [Alpha ][ 0.610908] . (13236 sec) [ -185923.1549] [44776] [depth= 1] . (13267 sec) [ -185922.7346] [44774] [depth= 4] . (13282 sec) [ -185914.5982] [44775] [depth= 5] . (13291 sec) [ -185914.1904] [44777] [depth= 3] . (13324 sec) [ -185909.9428] [44772] [depth= 2] . (13350 sec) [ -185907.2980] [44772] [depth= 1] . (13372 sec) [ -185906.3433] [44774] [depth= 2] . (13443 sec) [ -185904.6446] [44775] [depth= 1] . (13473 sec) [ -185902.1586] [44775] [depth= 1] . (13498 sec) [ -185898.7635] [44773] [depth= 1] . (13562 sec) [ -185895.6804] [44769] [depth= 1] . (13577 sec) [ -185894.6027] [44771] [depth= 1] . (13585 sec) [ -185894.5425] [44773] [depth= 1] . (13594 sec) [ -185893.8752] [44771] [depth= 1] . (13628 sec) [ -185891.1029] [44771] [depth= 1] . (13648 sec) [ -185890.2246] [44769] [depth= 1] . (13660 sec) [ -185885.8239] [44766] [depth= 1] . (13674 sec) [ -185885.1167] [44765] [depth= 1] . (13785 sec) [ -185884.0355] [44764] [depth= 1] . (13796 sec) [ -185881.0808] [44765] [depth= 1] . (13859 sec) [ -185878.6708] [44764] [depth= 1] . (13966 sec) [ -185877.2674] [44761] [depth= 1] . (13975 sec) [ -185876.5428] [44758] [depth= 1] . (14090 sec) [ -185875.7303] [44756] [depth= 1] . (14103 sec) [ -185874.9411] [44759] [depth= 1] . (14116 sec) [ -185873.9299] [44761] [depth= 1] . (14189 sec) [ -185872.4906] [44763] [depth= 2] . (14257 sec) [ -185871.3778] [44755] [depth= 2] . (14266 sec) [ -185870.8075] [44755] [depth= 1] . (14294 sec) [ -185870.1512] [44753] [depth= 1] . (14316 sec) [ -185869.5175] [44755] [depth= 1] . (14336 sec) [ -185869.1923] [44757] [depth= 3] . (14466 sec) [ -185860.4917] [44757] [depth= 10] . (14479 sec) [ -185859.6835] [44756] [depth= 1] . (14527 sec) [ -185857.1857] [44760] [depth= 1] . (14544 sec) [ -185856.2677] [44762] [depth= 2] . (14671 sec) [ -185854.1537] [44765] [depth= 2] . (14753 sec) [ -185853.6329] [44763] [depth= 3] . (14761 sec) [ -185843.9652] [44766] [depth= 5] . (14774 sec) [ -185785.2626] [44756] [depth= 8] . (14817 sec) [ -185778.8288] [44759] [depth= 1] . (14836 sec) [ -185773.8930] [44761] [depth= 2] . (14868 sec) [ -185771.7920] [44761] [depth= 1] . (14949 sec) [ -185765.6407] [44758] [depth= 1] . (15002 sec) [ -185763.9914] [44755] [depth= 2] . (15022 sec) [ -185763.8786] [44757] [depth= 1] . (15030 sec) [ -185763.8620] [44756] [depth= 1] . (15039 sec) [ -185763.3391] [44757] [depth= 2] . (15048 sec) [ -185760.4272] [44747] [depth= 1] . (15066 sec) [ -185756.6312] [44752] [depth= 1] . (15077 sec) [ -185756.3691] [44747] [depth= 1] . (15089 sec) [ -185756.2135] [44748] [depth= 1] . (15111 sec) [ -185754.6006] [44748] [depth= 1] . (15161 sec) [ -185752.2591] [44746] [depth= 1] . (15254 sec) [ -185747.9196] [44744] [depth= 1] . (15286 sec) [ -185747.4035] [44746] [depth= 1] . (15309 sec) [ -185746.1339] [44744] [depth= 1] . (15342 sec) [ -185744.7177] [44745] [depth= 1] . (15352 sec) [ -185741.8320] [44741] [depth= 2] . (15376 sec) [ -185738.7696] [44738] [depth= 1] . (15386 sec) [ -185737.5867] [44738] [depth= 2] . (15407 sec) [ -185733.5550] [44740] [depth= 1] . (15437 sec) [ -185723.6486] [44735] [depth= 1] . (15474 sec) [ -185718.3669] [44730] [depth= 1] . (15539 sec) [ -185718.1748] [44730] [depth= 1] . (15571 sec) [ -185716.9398] [44732] [depth= 1] . (15585 sec) [ -185715.5169] [44731] [depth= 1] . (15685 sec) [ -185714.7816] [44730] [depth= 2] . (15702 sec) [ -185711.3633] [44733] [depth= 1] . (15735 sec) [ -185710.4914] [44732] [depth= 1] . (15770 sec) [ -185710.2198] [44733] [depth= 1] . (15778 sec) [ -185710.1101] [44729] [depth= 3] . (15794 sec) [ -185703.7942] [44724] [depth= 9] . (15803 sec) [ -185703.3503] [44725] [depth= 1] . (15817 sec) [ -185701.5750] [44727] [depth= 1] . (15827 sec) [ -185700.8339] [44725] [depth= 1] . (15854 sec) [ -185697.0638] [44729] [depth= 1] . (15895 sec) [ -185693.4221] [44722] [depth= 4] . (15904 sec) [ -185691.4565] [44720] [depth= 1] . (15922 sec) [ -185688.9069] [44725] [depth= 18] . (15938 sec) [ -185688.7674] [44721] [depth= 1] . (15947 sec) [ -185675.6696] [44711] [depth= 9] . (15964 sec) [ -185673.4291] [44709] [depth= 1] . (16009 sec) [ -185673.3639] [44708] [depth= 1] . (16049 sec) [ -185666.4407] [44699] [depth= 3] . (16131 sec) [ -185665.4541] [44698] [depth= 1] . (16151 sec) [ -185664.7365] [44697] [depth= 1] . (16180 sec) [ -185654.2520] [44700] [depth= 14] . (16190 sec) [ -185653.8278] [44702] [depth= 1] . (16205 sec) [ -185653.8066] [44703] [depth= 1] . (16217 sec) [ -185651.8570] [44703] [depth= 1] . (16230 sec) [ -185650.7936] [44702] [depth= 1] . (16250 sec) [ -185649.8124] [44702] [depth= 1] . (16317 sec) [ -185649.2593] [44700] [depth= 1] . (16349 sec) [ -185649.1758] [44703] [depth= 3] . (16372 sec) [ -185648.0964] [44707] [depth= 1] . (16390 sec) [ -185646.5703] [44705] [depth= 1] . (16406 sec) [ -185646.5312] [44710] [depth= 1] . (16447 sec) [ -185646.0371] [44708] [depth= 1] . (16458 sec) [ -185645.4205] [44710] [depth= 1] . (16471 sec) [ -185645.3775] [44710] [depth= 1] . (16488 sec) [ -185643.2064] [44709] [depth= 1] . (16521 sec) [ -185641.8197] [44708] [depth= 1] . (16548 sec) [ -185641.6993] [44707] [depth= 2] . (16566 sec) [ -185640.9034] [44707] [depth= 2] . (16575 sec) [ -185639.8663] [44706] [depth= 1] . (16583 sec) [ -185639.3563] [44702] [depth= 1] . (16597 sec) [ -185638.8479] [44704] [depth= 1] . (16609 sec) [ -185636.7745] [44706] [depth= 1] . (16641 sec) [ -185636.6326] [44707] [depth= 1] . (16674 sec) [ -185635.4702] [44709] [depth= 1] . (16689 sec) [ -185634.2188] [44709] [depth= 1] . (16701 sec) [ -185625.6417] [44711] [depth= 6] . (16795 sec) [ -185624.4663] [44710] [depth= 1] . (16804 sec) [ -185623.1570] [44712] [depth= 1] . (16837 sec) [ -185621.4517] [44712] [depth= 1] . (16846 sec) [ -185620.1825] [44715] [depth= 1] . (16880 sec) [ -185619.7861] [44716] [depth= 1] . (17023 sec) [ -185617.9726] [44716] [depth= 1] . (17062 sec) [ -185617.5369] [44715] [depth= 1] . (17079 sec) [ -185615.6907] [44716] [depth= 1] . (17090 sec) [ -185614.4924] [44713] [depth= 1] . (17112 sec) [ -185614.3980] [44711] [depth= 1] . (17120 sec) [ -185614.1169] [44708] [depth= 1] . (17163 sec) [ -185609.6544] [44709] [depth= 1] . (17177 sec) [ -185608.5186] [44714] [depth= 1] . (17186 sec) [ -185608.1391] [44706] [depth= 6] . (17227 sec) [ -185606.7447] [44705] [depth= 1] . (17236 sec) [ -185606.6695] [44705] [depth= 2] . (17413 sec) [ -185606.1105] [44710] [depth= 1] . (17424 sec) [ -185601.3258] [44707] [depth= 1] . (17432 sec) [ -185599.9846] [44707] [depth= 1] . (17456 sec) [ -185598.1413] [44711] [depth= 1] . (17488 sec) [ -185595.6168] [44712] [depth= 13] . (17515 sec) [ -185593.6017] [44713] [depth= 4] . (17557 sec) [ -185590.2302] [44703] [depth= 1] . (17609 sec) [ -185585.7649] [44704] [depth= 1] . (17630 sec) [ -185580.2652] [44700] [depth= 19] . (17684 sec) [ -185157.0144] [Branch lengths ] . (17810 sec) [ -185153.5276] [GTR parameters ] . (17825 sec) [ -185137.6706] [Alpha ][ 0.580903] . (17853 sec) [ -185137.3497] [44699] [depth= 1] . (17873 sec) [ -185137.2776] [44701] [depth= 1] . (17910 sec) [ -185134.5960] [44699] [depth= 1] . (17949 sec) [ -185131.7550] [44698] [depth= 5] . (17969 sec) [ -185129.8751] [44700] [depth= 1] . (18065 sec) [ -185124.4654] [44701] [depth= 3] . (18273 sec) [ -185122.7917] [44702] [depth= 1] . (18286 sec) [ -185121.9706] [44701] [depth= 1] . (18783 sec) [ -185121.7291] [44700] [depth= 1] . (18837 sec) [ -185120.5090] [44697] [depth= 1] . (18884 sec) [ -185120.3218] [44700] [depth= 1] . (19024 sec) [ -185119.9707] [44703] [depth= 1] . (19107 sec) [ -185119.0013] [44706] [depth= 1] . (19133 sec) [ -185118.2064] [44710] [depth= 1] . (19312 sec) [ -185117.5088] [44709] [depth= 3] . (19410 sec) [ -185116.3231] [44703] [depth= 2] . (19493 sec) [ -185114.0638] [44705] [depth= 2] . (19562 sec) [ -185113.6059] [44703] [depth= 1] . (19611 sec) [ -185112.4948] [44704] [depth= 1] . (19619 sec) [ -185110.7473] [44703] [depth= 1] . (19666 sec) [ -185108.9590] [44705] [depth= 1] . (19823 sec) [ -185107.9753] [44703] [depth= 1] . (19849 sec) [ -185107.1782] [44704] [depth= 1] . (19861 sec) [ -185106.7369] [44703] [depth= 1] . (19939 sec) [ -185104.9078] [44701] [depth= 1] . (19967 sec) [ -185104.6528] [44700] [depth= 2] . (20042 sec) [ -185103.4240] [44700] [depth= 1] . (20099 sec) [ -185103.2527] [44699] [depth= 1] . (20140 sec) [ -185102.9383] [44702] [depth= 1] . (20177 sec) [ -185101.7999] [44702] [depth= 2] . (20193 sec) [ -185100.9287] [44701] [depth= 1] . (20259 sec) [ -185100.4811] [44699] [depth= 1] . (20282 sec) [ -185100.4557] [44697] [depth= 1] . (20290 sec) [ -185099.4394] [44699] [depth= 1] . (20334 sec) [ -185096.9478] [44699] [depth= 6] . (20383 sec) [ -185085.5794] [44693] [depth= 2] . (20409 sec) [ -185084.4681] [44697] [depth= 1] . (20549 sec) [ -185082.0701] [44699] [depth= 4] . (20589 sec) [ -185081.8140] [44699] [depth= 1] . (20652 sec) [ -185080.6219] [44697] [depth= 1] . (20673 sec) [ -185080.6071] [44698] [depth= 1] . (20690 sec) [ -185079.0747] [44702] [depth= 1] . (20729 sec) [ -185078.9981] [44702] [depth= 1] . (20756 sec) [ -185077.8410] [44704] [depth= 1] . (20850 sec) [ -185077.3142] [44704] [depth= 1] . (20986 sec) [ -185076.2919] [44703] [depth= 7] . (21021 sec) [ -185075.9435] [44701] [depth= 1] . (21054 sec) [ -185074.7743] [44699] [depth= 1] . (21109 sec) [ -185074.0468] [44702] [depth= 4] . (21136 sec) [ -185073.4838] [44701] [depth= 1] . (21618 sec) [ -185071.1212] [44702] [depth= 7] . (21862 sec) [ -185070.9331] [44699] [depth= 1] . (22102 sec) [ -184843.2411] [Branch lengths ] . (22228 sec) [ -184842.3055] [GTR parameters ] . (22243 sec) [ -184827.0208] [Alpha ][ 0.554259] . (22331 sec) [ -184825.2421] [44699] [depth= 1] . (22347 sec) [ -184823.1638] [44698] [depth= 2] . (22391 sec) [ -184823.1298] [44699] [depth= 1] . (23279 sec) [ -184822.9707] [44700] [depth= 1] . (23328 sec) [ -184816.7688] [44698] [depth= 2] . (23379 sec) [ -184816.6680] [44698] [depth= 1] . (23519 sec) [ -184816.2993] [44699] [depth= 1] . (23564 sec) [ -184816.2138] [44699] [depth= 1] . (23923 sec) [ -184815.3077] [44695] [depth= 1] . (24198 sec) [ -184813.5800] [44699] [depth= 5] . (24386 sec) [ -184813.4612] [44700] [depth= 1] . (24464 sec) [ -184813.3431] [44698] [depth= 1] . (24583 sec) [ -184813.0696] [44699] [depth= 1] . (24626 sec) [ -184809.5014] [44694] [depth= 1] . (24705 sec) [ -184809.2081] [44695] [depth= 2] . (24745 sec) [ -184809.0558] [44694] [depth= 1] . (24846 sec) [ -184808.9728] [44695] [depth= 1] . (24918 sec) [ -184807.2176] [44696] [depth= 2] . (24985 sec) [ -184807.0342] [44696] [depth= 1] . (25470 sec) [ -184803.0572] [44698] [depth= 2] . (25677 sec) [ -184802.7347] [44697] [depth= 1] . (25915 sec) [ -184802.0285] [44696] [depth= 1] . (26711 sec) [ -184801.7128] [44696] [depth= 1] . (26988 sec) [ -184674.7808] [Branch lengths ] . (27084 sec) [ -184674.4134] [GTR parameters ] . (27099 sec) [ -184664.5176] [Alpha ][ 0.534154] . (27243 sec) [ -184664.0512] [44694] [depth= 1] . (27531 sec) [ -184663.5973] [44694] [depth= 1] . (28086 sec) [ -184663.5024] [44694] [depth= 1] . (28366 sec) [ -184663.1764] [44694] [depth= 1] . (29077 sec) [ -184663.0228] [44692] [depth= 1] . (29367 sec) [ -184662.2615] [44691] [depth= 1] . (29488 sec) [ -184661.6487] [44691] [depth= 1] . (30152 sec) [ -184661.5159] [44691] [depth= 1] . (31307 sec) [ -184661.4116] [44692] [depth= 6] . (31328 sec) [ -184659.7669] [44689] [depth= 5] . (31717 sec) [ -184659.4455] [44689] [depth= 1] . (31982 sec) [ -184586.2833] [Branch lengths ] . (32077 sec) [ -184585.7591] [GTR parameters ] . (32090 sec) [ -184580.4032] [Alpha ][ 0.520792] . (33449 sec) [ -184579.5996] [44685] [depth= 1] . (33682 sec) [ -184578.8765] [44686] [depth= 4] . (33748 sec) [ -184577.8681] [44686] [depth= 2] . (34372 sec) [ -184577.4079] [44684] [depth= 1] . (34697 sec) [ -184577.3848] [44682] [depth= 1] . (35437 sec) [ -184576.7431] [44684] [depth= 3] . (36616 sec) [ -184576.3675] [44686] [depth= 1] . (36696 sec) [ -184543.2318] [Branch lengths ] . (36806 sec) [ -184543.0681] [GTR parameters ] . (36821 sec) [ -184539.6210] [Alpha ][ 0.510434] . (38285 sec) [ -184539.4899] [44688] [depth= 2] . (39082 sec) [ -184539.4783] [44689] [depth= 1] . (39517 sec) [ -184539.1253] [44691] [depth= 4] . (39623 sec) [ -184537.9498] [44687] [depth= 1] . (39812 sec) [ -184537.9294] [44683] [depth= 2] . (40643 sec) [ -184517.8337] [Branch lengths ] . (40754 sec) [ -184517.7851] [GTR parameters ] . (40767 sec) [ -184516.7376] [Alpha ][ 0.504745] . (43882 sec) [ -184515.3420] [44679] [depth= 1] . (43932 sec) [ -184515.0500] [44679] [depth= 1] . (44526 sec) [ -184514.7553] [44680] [depth= 2] . (45073 sec) [ -184480.6016] [Branch lengths ] . (45167 sec) [ -184480.5758] [GTR parameters ] . (45180 sec) [ -184480.2196] [Alpha ][ 0.501471] . (49098 sec) [ -184479.3468] [44681] [depth= 1] . (49227 sec) [ -184479.0624] [44681] [depth= 1] . (49759 sec) [ -184477.7023] [44682] [depth= 1] . (50306 sec) [ -184422.2729] [Branch lengths ] . (50353 sec) [ -184422.2682] [GTR parameters ] . (50366 sec) [ -184422.0716] [Alpha ][ 0.499058] . (54160 sec) [ -184389.1528] [Branch lengths ] . (54442 sec) [ -184388.8404] [44682] [depth= 1] . (56750 sec) [ -184388.6105] [44687] [depth= 1] . (56825 sec) [ -184388.2332] [44682] [depth= 1] . (59234 sec) [ -184387.9871] [44694] [depth= 4] . (59859 sec) [ -184387.9728] [44693] [depth= 2] . (60033 sec) [ -184387.0409] [44694] [depth= 1] . (60437 sec) [ -184386.6336] [44692] [depth= 1] . (61579 sec) [ -184385.5123] [44693] [depth= 1] . (61768 sec) [ -184384.3983] [44693] [depth= 1] . (61890 sec) [ -184383.4084] [44692] [depth= 1] . (62054 sec) [ -184381.5715] [44692] [depth= 1] . (62094 sec) [ -184381.5379] [44692] [depth= 1] . (62492 sec) [ -184379.9271] [44690] [depth= 1] . (63041 sec) [ -184379.2263] [44689] [depth= 1] . (63555 sec) [ -184379.0291] [44688] [depth= 1] . (64450 sec) [ -184378.2046] [44690] [depth= 1] . (64501 sec) [ -184370.9687] [Branch lengths ] . (64596 sec) [ -184370.9608] [GTR parameters ] . (64611 sec) [ -184370.9383] [Alpha ][ 0.498060] . (70511 sec) [ -184370.7721] [44694] [depth= 1] . (71469 sec) [ -184369.4460] [44693] [depth= 1] . (73717 sec) [ -184369.3145] [44693] [depth= 1] . (77922 sec) [ -184367.2443] [Branch lengths ] . (78016 sec) [ -184367.2415] [GTR parameters ] . (78027 sec) [ -184367.2331] [Alpha ][ 0.497562] . (85543 sec) [ -184367.2199] [44692] [depth= 1] . (91355 sec) [ -184366.6859] [Branch lengths ] . (91386 sec) [ -184366.6856] [GTR parameters ] . (91397 sec) [ -184366.6799] [Alpha ][ 0.497065] . (91402 sec) [ -184366.6799] [Topology ] . (91553 sec) [ -184357.0724] [Topology ] . (91704 sec) [ -184352.8992] [Topology ] . (91855 sec) [ -184352.0239] [Topology ] . (92005 sec) [ -184351.7873] [Topology ] . (92156 sec) [ -184351.7021] [Topology ] . (92306 sec) [ -184351.5302] [Topology ] . (92456 sec) [ -184351.5565] [Topology ] . Moving backward . (92467 sec) [ -184351.4005] [Topology ] . (92618 sec) [ -184351.3765] [Topology ] . (92857 sec) [ -184351.3476] [GTR parameters ] . (92872 sec) [ -184351.3460] [Alpha ][ 0.496568] . (92876 sec) [ -184351.3460] [Topology ] . (93026 sec) [ -184351.3498] [Topology ] . Moving backward . (93037 sec) [ -184351.3283] [Topology ] . (93188 sec) [ -184351.3217] [Topology ] . (93338 sec) [ -184351.3201] [Topology ] . (93488 sec) [ -184351.3231] [Topology ] . Moving backward . (93499 sec) [ -184351.3155] [Topology ] . (93649 sec) [ -184351.3144] [Topology ] . (93800 sec) [ -184351.3143] [Topology ] . (93831 sec) [ -184351.3143] [GTR parameters ] . (93842 sec) [ -184351.3143] [Alpha ][ 0.496568] . (93847 sec) [ -184351.3143] [Topology ] . (93997 sec) [ -184351.3155] [Topology ] . Moving backward . (94008 sec) [ -184351.3129] [Topology ] . (94158 sec) [ -184351.3127] [Topology ] . (94190 sec) [ -184351.3125] [GTR parameters ] . (94202 sec) [ -184351.3125] [Alpha ][ 0.496568] . (94207 sec) [ -184351.3125] [Topology ] . (94357 sec) [ -184351.3126] [Topology ] . (94388 sec) [ -184351.3126] [GTR parameters ] . (94399 sec) [ -184351.3126] [Alpha ][ 0.496568] . Checking for NNIs, optimizing five branches... . (95583 sec) [ -184349.7261] [Topology ] . Checking for NNIs, optimizing five branches... . (96765 sec) [ -184349.3909] [Topology ] . Checking for NNIs, optimizing five branches... . (97941 sec) [ -184349.1232] [Topology ] . Checking for NNIs, optimizing five branches... . (99109 sec) [ -184348.9165] [Topology ] . Checking for NNIs, optimizing five branches... . (100279 sec) [ -184348.7227] [Topology ] . Checking for NNIs, optimizing five branches... . (101448 sec) [ -184348.6857] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -184348.685689. . Printing the most likely tree in file 'nucleic_M4056_408x9563_2008.phy_phyml_tree.txt'... . Time used 28h30m24s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 102481.88user 0.00system 28:31:41elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps