.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2580_40x12034_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 11534 patterns found. (out of a total of 12034 sites) . 1469 sites without polymorphism (12.21%). . Computing pairwise distances... . Building BioNJ tree... . WARNING: this analysis requires at least 1080Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 20 sec) [ -406584.1629] [Alpha ][ 0.877636] . ( 55 sec) [ -406573.0812] [75475] [depth= 1] . ( 292 sec) [ -406480.0928] [75498] [depth= 1] . ( 303 sec) [ -406447.7766] [75475] [depth= 1] . ( 325 sec) [ -406395.5635] [75498] [depth= 1] . ( 339 sec) [ -406394.7839] [75480] [depth= 1] . ( 470 sec) [ -406282.2026] [75578] [depth= 1] . ( 517 sec) [ -406172.1671] [75584] [depth= 1] . ( 542 sec) [ -406144.4457] [75613] [depth= 1] . ( 557 sec) [ -406050.4050] [75584] [depth= 1] . ( 615 sec) [ -405886.6108] [75601] [depth= 3] . ( 638 sec) [ -405828.6077] [75597] [depth= 1] . ( 697 sec) [ -405739.5145] [75623] [depth= 1] . ( 725 sec) [ -405596.2878] [75597] [depth= 1] . ( 825 sec) [ -404246.2682] [Branch lengths ] . ( 845 sec) [ -404198.2703] [Alpha ][ 0.997870] . ( 1269 sec) [ -404190.8802] [75601] [depth= 3] . ( 1501 sec) [ -404179.6793] [75493] [depth= 1] . ( 1603 sec) [ -403989.2389] [Branch lengths ] . ( 1621 sec) [ -403987.7243] [Alpha ][ 1.020577] . ( 2342 sec) [ -403958.4554] [Branch lengths ] . ( 2348 sec) [ -403958.4554] [Topology ] . ( 2441 sec) [ -403954.3568] [Topology ] . ( 2534 sec) [ -403952.7438] [Topology ] . ( 2627 sec) [ -403951.8368] [Topology ] . ( 2719 sec) [ -403951.3078] [Topology ] . ( 2812 sec) [ -403950.9942] [Topology ] . ( 2905 sec) [ -403950.8079] [Topology ] . ( 2923 sec) [ -403950.2700] [Alpha ][ 1.034845] . ( 2930 sec) [ -403950.2700] [Topology ] . ( 3022 sec) [ -403950.1198] [Topology ] . ( 3115 sec) [ -403950.0336] [Topology ] . ( 3208 sec) [ -403949.9824] [Topology ] . ( 3300 sec) [ -403949.9517] [Topology ] . ( 3393 sec) [ -403949.9333] [Topology ] . ( 3486 sec) [ -403949.9222] [Topology ] . ( 3502 sec) [ -403949.9211] [Alpha ][ 1.035879] . ( 3509 sec) [ -403949.9211] [Topology ] . ( 3601 sec) [ -403949.9139] [Topology ] . ( 3694 sec) [ -403949.9096] [Topology ] . ( 3787 sec) [ -403949.9070] [Topology ] . ( 3880 sec) [ -403949.9054] [Topology ] . ( 3972 sec) [ -403949.9044] [Topology ] . ( 3988 sec) [ -403949.9044] [Alpha ][ 1.035879] . ( 3995 sec) [ -403949.9044] [Topology ] . ( 4088 sec) [ -403949.9039] [Topology ] . ( 4104 sec) [ -403949.9039] [Alpha ][ 1.035879] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -403949.903852. . Printing the most likely tree in file 'proteic_M2580_40x12034_2005.phy_phyml_tree.txt'... . Time used 1h23m55s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 5014.19user 0.00system 1:24:04elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps