.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M3068_50x1000_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 956 patterns found. (out of a total of 1000 sites) . 114 sites without polymorphism (11.40%). . Computing pairwise distances... . Building BioNJ tree... . WARNING: this analysis will use at least 114Mo of memory space... . Maximizing likelihood (using SPR moves)... . ( 3 sec) [ -68672.7398] [Alpha ][ 1.356649] . ( 10 sec) [ -68670.6282] [15563] [depth= 1] . ( 37 sec) [ -68653.7214] [15563] [depth= 2] . ( 41 sec) [ -68641.2984] [15568] [depth= 1] . ( 43 sec) [ -68634.2518] [15565] [depth= 1] . ( 52 sec) [ -68631.1899] [15564] [depth= 1] . ( 54 sec) [ -68624.0823] [15565] [depth= 1] . ( 65 sec) [ -68621.7941] [15564] [depth= 4] . ( 75 sec) [ -68620.4378] [15564] [depth= 1] . ( 77 sec) [ -68618.8698] [15564] [depth= 1] . ( 81 sec) [ -68618.3095] [15563] [depth= 1] . ( 82 sec) [ -68617.2307] [15545] [depth= 2] . ( 87 sec) [ -68617.1521] [15550] [depth= 1] . ( 88 sec) [ -68608.3150] [15546] [depth= 3] . ( 92 sec) [ -68605.0033] [15538] [depth= 2] . ( 97 sec) [ -68601.3540] [15540] [depth= 2] . ( 101 sec) [ -68599.2854] [15541] [depth= 1] . ( 105 sec) [ -68597.9156] [15544] [depth= 1] . ( 107 sec) [ -68597.7902] [15541] [depth= 1] . ( 115 sec) [ -68595.4617] [15537] [depth= 3] . ( 122 sec) [ -68582.4596] [15538] [depth= 1] . ( 123 sec) [ -68582.3565] [15530] [depth= 1] . ( 128 sec) [ -68549.5617] [15529] [depth= 2] . ( 133 sec) [ -68536.5784] [15529] [depth= 1] . ( 135 sec) [ -68530.8887] [15520] [depth= 3] . ( 140 sec) [ -68486.1694] [15503] [depth= 5] . ( 144 sec) [ -68485.6920] [15506] [depth= 1] . ( 146 sec) [ -68407.2923] [15501] [depth= 5] . ( 150 sec) [ -68256.1490] [Branch lengths ] . ( 152 sec) [ -68255.7299] [Alpha ][ 1.407388] . ( 160 sec) [ -68254.9353] [15497] [depth= 1] . ( 174 sec) [ -68253.8461] [15495] [depth= 1] . ( 187 sec) [ -68251.5014] [15496] [depth= 1] . ( 190 sec) [ -68248.1141] [15498] [depth= 1] . ( 213 sec) [ -68246.4751] [15500] [depth= 1] . ( 221 sec) [ -68243.6971] [15492] [depth= 1] . ( 224 sec) [ -68236.2663] [15497] [depth= 1] . ( 235 sec) [ -68235.6110] [15501] [depth= 1] . ( 239 sec) [ -68235.3118] [15502] [depth= 1] . ( 247 sec) [ -68234.0308] [15500] [depth= 4] . ( 254 sec) [ -68233.8523] [15504] [depth= 1] . ( 301 sec) [ -68233.7223] [15508] [depth= 1] . ( 303 sec) [ -68229.9365] [15512] [depth= 1] . ( 305 sec) [ -68229.1225] [15514] [depth= 1] . ( 326 sec) [ -68219.0220] [15509] [depth= 1] . ( 334 sec) [ -68180.4086] [Branch lengths ] . ( 336 sec) [ -68180.4045] [Alpha ][ 1.412476] . ( 423 sec) [ -68180.0132] [15508] [depth= 1] . ( 478 sec) [ -68179.7743] [15505] [depth= 1] . ( 539 sec) [ -68166.7926] [Branch lengths ] . ( 541 sec) [ -68166.7926] [Alpha ][ 1.412476] . ( 748 sec) [ -68164.6522] [Branch lengths ] . ( 749 sec) [ -68164.6522] [Topology ] . ( 759 sec) [ -68164.2519] [Topology ] . ( 770 sec) [ -68164.0588] [Topology ] . ( 780 sec) [ -68163.9318] [Topology ] . ( 790 sec) [ -68163.8414] [Topology ] . ( 801 sec) [ -68163.7748] [Topology ] . ( 811 sec) [ -68163.7251] [Topology ] . ( 813 sec) [ -68163.6910] [Alpha ][ 1.397127] . ( 814 sec) [ -68163.6910] [Topology ] . ( 824 sec) [ -68163.6421] [Topology ] . ( 835 sec) [ -68163.6054] [Topology ] . ( 845 sec) [ -68163.5773] [Topology ] . ( 855 sec) [ -68163.5557] [Topology ] . ( 865 sec) [ -68163.5391] [Topology ] . ( 876 sec) [ -68163.5264] [Topology ] . ( 878 sec) [ -68163.5216] [Alpha ][ 1.391337] . ( 879 sec) [ -68163.5216] [Topology ] . ( 889 sec) [ -68163.5094] [Topology ] . ( 899 sec) [ -68163.5001] [Topology ] . ( 910 sec) [ -68163.4929] [Topology ] . ( 920 sec) [ -68163.4873] [Topology ] . ( 930 sec) [ -68163.4830] [Topology ] . ( 941 sec) [ -68163.4796] [Topology ] . ( 943 sec) [ -68163.4783] [Alpha ][ 1.388167] . ( 944 sec) [ -68163.4783] [Topology ] . ( 954 sec) [ -68163.4750] [Topology ] . ( 964 sec) [ -68163.4725] [Topology ] . ( 975 sec) [ -68163.4705] [Topology ] . ( 985 sec) [ -68163.4690] [Topology ] . ( 995 sec) [ -68163.4678] [Topology ] . ( 1006 sec) [ -68163.4669] [Topology ] . ( 1008 sec) [ -68163.4666] [Alpha ][ 1.386461] . ( 1008 sec) [ -68163.4666] [Topology ] . ( 1019 sec) [ -68163.4656] [Topology ] . ( 1021 sec) [ -68163.4656] [Alpha ][ 1.386461] . Checking for NNIs, optimizing five branches... . ( 1122 sec) [ -68163.2137] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1226 sec) [ -68163.0600] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1331 sec) [ -68162.9939] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -68162.993880. . Printing the most likely tree in file 'proteic_M3068_50x1000_2006.phy_phyml_tree.txt'... . Time used 0h23m56s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 1432.24user 0.00system 23:57.99elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps