.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M3497_105x899_2007.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 869 patterns found. (out of a total of 899 sites) . 88 sites without polymorphism (9.79%). . Computing pairwise distances... . Building BioNJ tree... . WARNING: this analysis will use at least 223Mo of memory space... . Maximizing likelihood (using SPR moves)... . ( 5 sec) [ -85764.1757] [Alpha ][ 1.524966] . ( 12 sec) [ -85760.9556] [18247] [depth= 1] . ( 22 sec) [ -85756.9645] [18247] [depth= 1] . ( 26 sec) [ -85754.9429] [18249] [depth= 1] . ( 30 sec) [ -85752.0896] [18247] [depth= 1] . ( 44 sec) [ -85715.9658] [18239] [depth= 1] . ( 47 sec) [ -85711.3675] [18239] [depth= 1] . ( 56 sec) [ -85704.7372] [18243] [depth= 1] . ( 60 sec) [ -85704.0430] [18245] [depth= 1] . ( 64 sec) [ -85703.5992] [18243] [depth= 1] . ( 70 sec) [ -85688.6475] [18238] [depth= 1] . ( 74 sec) [ -85680.6987] [18242] [depth= 1] . ( 83 sec) [ -85679.7039] [18234] [depth= 7] . ( 90 sec) [ -85650.2881] [18237] [depth= 2] . ( 108 sec) [ -85615.2139] [18240] [depth= 1] . ( 125 sec) [ -85614.5838] [18235] [depth= 2] . ( 128 sec) [ -85611.0622] [18236] [depth= 1] . ( 140 sec) [ -85608.2459] [18236] [depth= 1] . ( 144 sec) [ -85607.9770] [18237] [depth= 1] . ( 149 sec) [ -85603.7087] [18230] [depth= 1] . ( 163 sec) [ -85603.5392] [18230] [depth= 2] . ( 174 sec) [ -85600.7413] [18225] [depth= 2] . ( 182 sec) [ -85600.1035] [18226] [depth= 1] . ( 188 sec) [ -85599.2742] [18225] [depth= 1] . ( 201 sec) [ -85596.4769] [18228] [depth= 2] . ( 204 sec) [ -85594.0309] [18219] [depth= 1] . ( 216 sec) [ -85590.1672] [18224] [depth= 1] . ( 222 sec) [ -85589.2756] [18227] [depth= 1] . ( 227 sec) [ -85584.6767] [18228] [depth= 1] . ( 230 sec) [ -85579.1111] [18224] [depth= 1] . ( 249 sec) [ -85572.3696] [18227] [depth= 1] . ( 254 sec) [ -85571.6562] [18229] [depth= 1] . ( 260 sec) [ -85569.9773] [18232] [depth= 1] . ( 263 sec) [ -85566.3007] [18231] [depth= 1] . ( 272 sec) [ -85564.9205] [18235] [depth= 1] . ( 277 sec) [ -85564.0450] [18237] [depth= 1] . ( 282 sec) [ -85557.6358] [18236] [depth= 1] . ( 285 sec) [ -85549.6562] [18237] [depth= 1] . ( 290 sec) [ -85549.4311] [18234] [depth= 1] . ( 293 sec) [ -85544.5731] [18227] [depth= 2] . ( 309 sec) [ -85544.0066] [18226] [depth= 1] . ( 312 sec) [ -85526.8213] [18229] [depth= 1] . ( 315 sec) [ -85525.0364] [18229] [depth= 1] . ( 320 sec) [ -85521.1786] [18231] [depth= 1] . ( 335 sec) [ -85520.3346] [18231] [depth= 1] . ( 356 sec) [ -85510.6967] [18223] [depth= 1] . ( 361 sec) [ -85507.0057] [18228] [depth= 1] . ( 364 sec) [ -85501.0355] [18228] [depth= 2] . ( 370 sec) [ -85490.1974] [18221] [depth= 1] . ( 376 sec) [ -85484.2109] [18227] [depth= 1] . ( 379 sec) [ -85481.3770] [18221] [depth= 1] . ( 382 sec) [ -85480.9285] [18216] [depth= 3] . ( 395 sec) [ -85474.8801] [18217] [depth= 1] . ( 398 sec) [ -85470.0715] [18220] [depth= 1] . ( 403 sec) [ -85462.7931] [18217] [depth= 1] . ( 412 sec) [ -85462.2077] [18217] [depth= 1] . ( 427 sec) [ -85458.0992] [18216] [depth= 1] . ( 431 sec) [ -85454.7107] [18217] [depth= 1] . ( 444 sec) [ -85449.8997] [18221] [depth= 1] . ( 453 sec) [ -85195.5564] [Branch lengths ] . ( 457 sec) [ -85194.9246] [Alpha ][ 1.595036] . ( 511 sec) [ -85194.3437] [18217] [depth= 1] . ( 527 sec) [ -85192.8528] [18215] [depth= 1] . ( 541 sec) [ -85187.3349] [18216] [depth= 1] . ( 562 sec) [ -85185.4702] [18216] [depth= 1] . ( 576 sec) [ -85182.6025] [18216] [depth= 1] . ( 663 sec) [ -85182.2396] [18217] [depth= 1] . ( 693 sec) [ -85180.5554] [18215] [depth= 2] . ( 699 sec) [ -85178.3135] [18212] [depth= 1] . ( 705 sec) [ -85169.8829] [18215] [depth= 1] . ( 710 sec) [ -85167.1513] [18208] [depth= 2] . ( 729 sec) [ -85163.3859] [18209] [depth= 1] . ( 753 sec) [ -85163.2550] [18213] [depth= 1] . ( 757 sec) [ -85162.4332] [18214] [depth= 1] . ( 785 sec) [ -85161.0465] [18213] [depth= 1] . ( 821 sec) [ -85160.7168] [18209] [depth= 1] . ( 844 sec) [ -85119.4512] [Branch lengths ] . ( 849 sec) [ -85119.4260] [Alpha ][ 1.610288] . ( 1079 sec) [ -85119.2273] [18219] [depth= 1] . ( 1098 sec) [ -85119.1141] [18216] [depth= 1] . ( 1109 sec) [ -85119.0907] [18215] [depth= 1] . ( 1224 sec) [ -85108.5590] [Branch lengths ] . ( 1228 sec) [ -85108.5589] [Alpha ][ 1.611898] . ( 1615 sec) [ -85101.0005] [Branch lengths ] . ( 1616 sec) [ -85101.0005] [Topology ] . ( 1637 sec) [ -85092.2240] [Topology ] . ( 1657 sec) [ -85089.5020] [Topology ] . ( 1678 sec) [ -85085.5382] [Topology ] . ( 1698 sec) [ -85083.4742] [Topology ] . ( 1719 sec) [ -85079.2847] [Topology ] . ( 1739 sec) [ -85075.0006] [Topology ] . ( 1760 sec) [ -85071.7840] [Topology ] . ( 1781 sec) [ -85068.7834] [Topology ] . ( 1801 sec) [ -85066.0214] [Topology ] . ( 1825 sec) [ -85061.4957] [Alpha ][ 1.482070] . ( 1826 sec) [ -85061.4957] [Topology ] . ( 1847 sec) [ -85058.2251] [Topology ] . ( 1868 sec) [ -85055.5243] [Topology ] . ( 1888 sec) [ -85053.3683] [Topology ] . ( 1909 sec) [ -85051.7108] [Topology ] . ( 1930 sec) [ -85050.4802] [Topology ] . ( 1950 sec) [ -85049.5917] [Topology ] . ( 1955 sec) [ -85048.2675] [Alpha ][ 1.391612] . ( 1957 sec) [ -85048.2675] [Topology ] . ( 1977 sec) [ -85046.9484] [Topology ] . ( 1998 sec) [ -85046.0167] [Topology ] . ( 2019 sec) [ -85045.3620] [Topology ] . ( 2040 sec) [ -85044.9094] [Topology ] . ( 2060 sec) [ -85044.6002] [Topology ] . ( 2081 sec) [ -85044.3905] [Topology ] . ( 2086 sec) [ -85043.8421] [Alpha ][ 1.337783] . ( 2087 sec) [ -85043.8421] [Topology ] . ( 2108 sec) [ -85043.4678] [Topology ] . ( 2129 sec) [ -85043.2212] [Topology ] . ( 2150 sec) [ -85043.0567] [Topology ] . ( 2170 sec) [ -85042.9477] [Topology ] . ( 2191 sec) [ -85042.8759] [Topology ] . ( 2212 sec) [ -85042.8289] [Topology ] . ( 2217 sec) [ -85042.6748] [Alpha ][ 1.310347] . ( 2219 sec) [ -85042.6748] [Topology ] . ( 2239 sec) [ -85042.5841] [Topology ] . ( 2260 sec) [ -85042.5264] [Topology ] . ( 2281 sec) [ -85042.4889] [Topology ] . ( 2302 sec) [ -85042.4643] [Topology ] . ( 2322 sec) [ -85042.4483] [Topology ] . ( 2343 sec) [ -85042.4378] [Topology ] . ( 2347 sec) [ -85042.4010] [Alpha ][ 1.297197] . ( 2349 sec) [ -85042.4010] [Topology ] . ( 2369 sec) [ -85042.3804] [Topology ] . ( 2390 sec) [ -85042.3673] [Topology ] . ( 2411 sec) [ -85042.3588] [Topology ] . ( 2432 sec) [ -85042.3533] [Topology ] . ( 2453 sec) [ -85042.3497] [Topology ] . ( 2473 sec) [ -85042.3473] [Topology ] . ( 2477 sec) [ -85042.3390] [Alpha ][ 1.290967] . ( 2479 sec) [ -85042.3390] [Topology ] . ( 2500 sec) [ -85042.3343] [Topology ] . ( 2521 sec) [ -85042.3313] [Topology ] . ( 2542 sec) [ -85042.3294] [Topology ] . ( 2563 sec) [ -85042.3281] [Topology ] . ( 2583 sec) [ -85042.3273] [Topology ] . ( 2588 sec) [ -85042.3257] [Alpha ][ 1.288270] . ( 2589 sec) [ -85042.3257] [Topology ] . ( 2610 sec) [ -85042.3245] [Topology ] . ( 2631 sec) [ -85042.3236] [Topology ] . ( 2636 sec) [ -85042.3236] [Alpha ][ 1.286982] . ( 2637 sec) [ -85042.3236] [Topology ] . ( 2658 sec) [ -85042.3227] [Topology ] . ( 2661 sec) [ -85042.3227] [Alpha ][ 1.286982] . Checking for NNIs, optimizing five branches... . ( 2860 sec) [ -85041.4922] [Topology ] . Checking for NNIs, optimizing five branches... . ( 3063 sec) [ -85039.7754] [Topology ] . Checking for NNIs, optimizing five branches... . ( 3265 sec) [ -85038.4683] [Topology ] . Checking for NNIs, optimizing five branches... . ( 3468 sec) [ -85037.1803] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -85037.180301. . Printing the most likely tree in file 'proteic_M3497_105x899_2007.phy_phyml_tree.txt'... . Time used 1h1m10s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 3656.98user 0.00system 1:01:18elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps