.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1380_9x1558_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Compute approximate likelihood ratio test : yes (SH-like branch supports) . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : no . Evaluted tree : file "user tree (proteic_M1380_9x1558_2003.phy_FAST_TREE)" . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 695 patterns found. (out of a total of 1558 sites) . 832 sites without polymorphism (53.40%). . Reading tree... . This analysis requires at least 12Mo of memory space. . ( 0 sec) [ -12047.4171] [Branch lengths ] . ( 1 sec) [ -12025.0153] [Alpha ][ 0.572949] . ( 1 sec) [ -12024.7518] [Branch lengths ] . ( 2 sec) [ -12024.7506] [Alpha ][ 0.570671] . ( 2 sec) [ -12024.7457] [Branch lengths ] . ( 2 sec) [ -12024.7456] [Alpha ][ 0.571242] . ( 3 sec) [ -12024.7454] [Branch lengths ] . ( 3 sec) [ -12024.7454] [Alpha ][ 0.571242] . ( 3 sec) [ -12024.7454] [Alpha ][ 0.571242] . Log likelihood of the current tree: -12024.745379. . Compute aLRT branch supports on the most likely tree... . Printing the most likely tree in file 'proteic_M1380_9x1558_2003.phy_phyml_tree.txt'... . Time used 0h0m12s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo java.lang.NullPointerException at java.io.FileInputStream.(FileInputStream.java:103) at java.io.FileReader.(FileReader.java:55) at Recomp.(Recomp.java:114) at Recomp.main(Recomp.java:52)