.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1392_57x430_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Compute approximate likelihood ratio test : yes (SH-like branch supports) . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : no . Evaluted tree : file "user tree (proteic_M1392_57x430_2003.phy_FAST_TREE)" . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 389 patterns found. (out of a total of 430 sites) . 150 sites without polymorphism (34.88%). . Reading tree... . This analysis requires at least 54Mo of memory space. . ( 3 sec) [ -8212.5551] [Branch lengths ] . ( 4 sec) [ -8185.7023] [Alpha ][ 0.552046] . ( 6 sec) [ -8184.5245] [Branch lengths ] . ( 7 sec) [ -8184.5195] [Alpha ][ 0.556376] . ( 9 sec) [ -8184.3331] [Branch lengths ] . ( 10 sec) [ -8184.3318] [Alpha ][ 0.558527] . ( 12 sec) [ -8184.2835] [Branch lengths ] . ( 13 sec) [ -8184.2832] [Alpha ][ 0.559617] . ( 15 sec) [ -8184.2673] [Branch lengths ] . ( 16 sec) [ -8184.2672] [Alpha ][ 0.560215] . ( 18 sec) [ -8184.2618] [Branch lengths ] . ( 19 sec) [ -8184.2618] [Alpha ][ 0.560775] . ( 21 sec) [ -8184.2598] [Branch lengths ] . ( 21 sec) [ -8184.2598] [Alpha ][ 0.560775] . ( 23 sec) [ -8184.2592] [Branch lengths ] . ( 24 sec) [ -8184.2592] [Alpha ][ 0.560775] . ( 25 sec) [ -8184.2592] [Alpha ][ 0.560775] . Log likelihood of the current tree: -8184.259183. . Compute aLRT branch supports on the most likely tree... . Printing the most likely tree in file 'proteic_M1392_57x430_2003.phy_phyml_tree.txt'... . Time used 0h1m4s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo java.lang.NullPointerException at java.io.FileInputStream.(FileInputStream.java:103) at java.io.FileReader.(FileReader.java:55) at Recomp.(Recomp.java:114) at Recomp.main(Recomp.java:52)