.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : nucleic_M2675_51x1537_2006.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : GTR . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 607 patterns found. (out of a total of 1537 sites) . 978 sites without polymorphism (63.63%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 16Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 3 sec) [ -8178.2748] [GTR parameters ] . ( 4 sec) [ -8087.4232] [Alpha ][ 0.500960] . ( 4 sec) [ -8087.4232] [Topology ] . ( 5 sec) [ -7959.9720] [Topology ] . ( 7 sec) [ -7936.8427] [Topology ] . ( 8 sec) [ -7933.2782] [Topology ] . ( 9 sec) [ -7932.4736] [Topology ] . ( 11 sec) [ -7932.2115] [Topology ] . ( 12 sec) [ -7931.9493] [Topology ] . ( 14 sec) [ -7930.8733] [Topology ] . ( 15 sec) [ -7927.9431] [Topology ] . Checking for NNIs, optimizing five branches... . ( 27 sec) [ -7926.6478] [GTR parameters ] . ( 27 sec) [ -7886.3932] [Alpha ][ 0.264515] . ( 27 sec) [ -7886.3932] [Topology ] . ( 29 sec) [ -7882.1933] [Topology ] . ( 30 sec) [ -7881.8491] [Topology ] . ( 31 sec) [ -7881.6938] [Topology ] . ( 33 sec) [ -7881.6300] [Topology ] . ( 34 sec) [ -7881.6105] [Topology ] . ( 35 sec) [ -7881.6038] [Topology ] . Checking for NNIs, optimizing five branches... . ( 47 sec) [ -7880.9586] [GTR parameters ] . ( 47 sec) [ -7880.7604] [Alpha ][ 0.253715] . ( 47 sec) [ -7880.7604] [Topology ] . ( 48 sec) [ -7880.7346] [Topology ] . ( 50 sec) [ -7880.7314] [Topology ] . ( 51 sec) [ -7880.7299] [Topology ] . ( 52 sec) [ -7880.7292] [Topology ] . Checking for NNIs, optimizing five branches... . ( 64 sec) [ -7880.7245] [GTR parameters ] . ( 64 sec) [ -7880.7226] [Alpha ][ 0.252603] . ( 64 sec) [ -7880.7226] [Topology ] . ( 65 sec) [ -7880.7218] [Topology ] . Checking for NNIs, optimizing five branches... . ( 75 sec) [ -7880.7218] [GTR parameters ] . ( 76 sec) [ -7880.7218] [Alpha ][ 0.252603] . ( 76 sec) [ -7880.7218] [Topology ] . ( 77 sec) [ -7880.7215] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -7880.721493. . Printing the most likely tree in file 'nucleic_M2675_51x1537_2006.phy_phyml_tree.txt'... . Time used 0h1m38s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 96.00user 0.00system 1:37.57elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps