.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1375_23x530_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 370 patterns found. (out of a total of 530 sites) . 201 sites without polymorphism (37.92%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 20Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -7895.0956] [Alpha ][ 0.500960] . ( 1 sec) [ -7895.0956] [Topology ] . ( 3 sec) [ -7829.5107] [Topology ] . ( 5 sec) [ -7808.3573] [Topology ] . ( 6 sec) [ -7794.6964] [Topology ] . ( 8 sec) [ -7792.1340] [Topology ] . ( 10 sec) [ -7791.3984] [Topology ] . ( 12 sec) [ -7791.0973] [Topology ] . ( 14 sec) [ -7790.9340] [Topology ] . ( 16 sec) [ -7790.8350] [Topology ] . ( 18 sec) [ -7790.7717] [Topology ] . Checking for NNIs, optimizing five branches... . ( 35 sec) [ -7790.6235] [Topology ] . ( 36 sec) [ -7789.9131] [Alpha ][ 0.549460] . ( 36 sec) [ -7789.9131] [Topology ] . ( 38 sec) [ -7789.8572] [Topology ] . ( 40 sec) [ -7789.8349] [Topology ] . ( 42 sec) [ -7789.8245] [Topology ] . ( 43 sec) [ -7789.8194] [Topology ] . ( 45 sec) [ -7789.8169] [Topology ] . ( 47 sec) [ -7789.8156] [Topology ] . Checking for NNIs, optimizing five branches... . ( 62 sec) [ -7789.8077] [Alpha ][ 0.554972] . ( 62 sec) [ -7789.8077] [Topology ] . ( 64 sec) [ -7789.8057] [Topology ] . ( 66 sec) [ -7789.8048] [Topology ] . Checking for NNIs, optimizing five branches... . ( 81 sec) [ -7789.8047] [Alpha ][ 0.555527] . ( 81 sec) [ -7789.8047] [Topology ] . ( 83 sec) [ -7789.8041] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -7789.804126. . Printing the most likely tree in file 'proteic_M1375_23x530_2003.phy_phyml_tree.txt'... . Time used 0h1m53s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 112.54user 0.00system 1:53.29elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps