.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1376_36x484_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 392 patterns found. (out of a total of 484 sites) . 132 sites without polymorphism (27.27%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 34Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -11637.9226] [Alpha ][ 0.518665] . ( 1 sec) [ -11637.9226] [Topology ] . ( 4 sec) [ -11554.1149] [Topology ] . ( 7 sec) [ -11539.4579] [Topology ] . ( 10 sec) [ -11537.1299] [Topology ] . ( 13 sec) [ -11536.3324] [Topology ] . ( 16 sec) [ -11536.0538] [Topology ] . ( 19 sec) [ -11535.9271] [Topology ] . ( 23 sec) [ -11535.8649] [Topology ] . ( 26 sec) [ -11535.8332] [Topology ] . ( 29 sec) [ -11535.8168] [Topology ] . Checking for NNIs, optimizing five branches... . ( 53 sec) [ -11532.2276] [Alpha ][ 0.620126] . ( 53 sec) [ -11532.2276] [Topology ] . ( 57 sec) [ -11531.7825] [Topology ] . ( 60 sec) [ -11531.5866] [Topology ] . ( 63 sec) [ -11531.4867] [Topology ] . ( 66 sec) [ -11531.4342] [Topology ] . ( 69 sec) [ -11531.4061] [Topology ] . ( 72 sec) [ -11531.3908] [Topology ] . Checking for NNIs, optimizing five branches... . ( 97 sec) [ -11531.2968] [Alpha ][ 0.638052] . ( 97 sec) [ -11531.2968] [Topology ] . ( 100 sec) [ -11531.2694] [Topology ] . ( 103 sec) [ -11531.2552] [Topology ] . ( 106 sec) [ -11531.2476] [Topology ] . ( 110 sec) [ -11531.2433] [Topology ] . ( 113 sec) [ -11531.2410] [Topology ] . ( 116 sec) [ -11531.2397] [Topology ] . Checking for NNIs, optimizing five branches... . ( 141 sec) [ -11531.2341] [Alpha ][ 0.642636] . ( 141 sec) [ -11531.2341] [Topology ] . ( 144 sec) [ -11531.2321] [Topology ] . ( 147 sec) [ -11531.2310] [Topology ] . ( 150 sec) [ -11531.2305] [Topology ] . Checking for NNIs, optimizing five branches... . ( 175 sec) [ -11531.2303] [Alpha ][ 0.643358] . ( 175 sec) [ -11531.2303] [Topology ] . ( 178 sec) [ -11531.2299] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -11531.229874. . Printing the most likely tree in file 'proteic_M1376_36x484_2003.phy_phyml_tree.txt'... . Time used 0h3m47s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 226.47user 0.00system 3:47.53elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps