.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1377_19x1566_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 921 patterns found. (out of a total of 1566 sites) . 698 sites without polymorphism (44.57%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 39Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -17793.6885] [Alpha ][ 0.500960] . ( 2 sec) [ -17793.6885] [Topology ] . ( 5 sec) [ -17680.2591] [Topology ] . ( 8 sec) [ -17661.7294] [Topology ] . ( 12 sec) [ -17656.0697] [Topology ] . ( 15 sec) [ -17648.2077] [Topology ] . ( 18 sec) [ -17643.9261] [Topology ] . ( 21 sec) [ -17643.0631] [Topology ] . ( 25 sec) [ -17633.7399] [Topology ] . ( 28 sec) [ -17629.7436] [Topology ] . ( 32 sec) [ -17620.8479] [Topology ] . Checking for NNIs, optimizing five branches... . ( 64 sec) [ -17609.7171] [Topology ] . ( 64 sec) [ -17609.2110] [Alpha ][ 0.528546] . ( 65 sec) [ -17609.2110] [Topology ] . ( 68 sec) [ -17605.1469] [Topology ] . ( 71 sec) [ -17601.1654] [Topology ] . ( 75 sec) [ -17600.4781] [Topology ] . ( 78 sec) [ -17600.3854] [Topology ] . ( 81 sec) [ -17600.3683] [Topology ] . ( 84 sec) [ -17600.3645] [Topology ] . ( 88 sec) [ -17600.3635] [Topology ] . Checking for NNIs, optimizing five branches... . ( 115 sec) [ -17600.0824] [Topology ] . ( 116 sec) [ -17600.0748] [Alpha ][ 0.532088] . ( 116 sec) [ -17600.0748] [Topology ] . ( 120 sec) [ -17594.8402] [Topology ] . ( 123 sec) [ -17592.2125] [Topology ] . ( 126 sec) [ -17590.8005] [Topology ] . ( 130 sec) [ -17588.6849] [Topology ] . ( 133 sec) [ -17581.0510] [Topology ] . ( 136 sec) [ -17576.6491] [Topology ] . ( 140 sec) [ -17576.1519] [Topology ] . ( 143 sec) [ -17576.1165] [Topology ] . ( 146 sec) [ -17576.1127] [Topology ] . Checking for NNIs, optimizing five branches... . ( 177 sec) [ -17576.0929] [Alpha ][ 0.537844] . ( 177 sec) [ -17576.0929] [Topology ] . ( 180 sec) [ -17576.0925] [Topology ] . Checking for NNIs, optimizing five branches... . ( 207 sec) [ -17576.0925] [Alpha ][ 0.537844] . ( 208 sec) [ -17576.0925] [Topology ] . ( 211 sec) [ -17576.0925] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -17576.092483. . Printing the most likely tree in file 'proteic_M1377_19x1566_2003.phy_phyml_tree.txt'... . Time used 0h4m26s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 261.94user 0.00system 4:26.10elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps