.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1378_18x1561_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 855 patterns found. (out of a total of 1561 sites) . 765 sites without polymorphism (49.01%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 34Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -16272.8201] [Alpha ][ 0.500960] . ( 2 sec) [ -16272.8201] [Topology ] . ( 4 sec) [ -16124.4060] [Topology ] . ( 7 sec) [ -16086.2129] [Topology ] . ( 10 sec) [ -16072.3076] [Topology ] . ( 13 sec) [ -16061.1236] [Topology ] . ( 16 sec) [ -16053.0032] [Topology ] . ( 19 sec) [ -16050.9918] [Topology ] . ( 22 sec) [ -16050.3042] [Topology ] . ( 25 sec) [ -16050.2324] [Topology ] . ( 28 sec) [ -16050.2141] [Topology ] . Checking for NNIs, optimizing five branches... . ( 54 sec) [ -16050.0087] [Topology ] . ( 55 sec) [ -16049.2399] [Alpha ][ 0.467378] . ( 55 sec) [ -16049.2399] [Topology ] . ( 58 sec) [ -16049.1251] [Topology ] . ( 61 sec) [ -16049.1165] [Topology ] . ( 64 sec) [ -16049.1154] [Topology ] . ( 67 sec) [ -16049.1151] [Topology ] . Checking for NNIs, optimizing five branches... . ( 91 sec) [ -16048.4517] [Topology ] . ( 92 sec) [ -16048.4488] [Alpha ][ 0.465254] . ( 92 sec) [ -16048.4488] [Topology ] . ( 95 sec) [ -16046.0347] [Topology ] . ( 98 sec) [ -16045.7175] [Topology ] . ( 101 sec) [ -16045.6690] [Topology ] . ( 104 sec) [ -16045.6568] [Topology ] . ( 107 sec) [ -16045.6536] [Topology ] . ( 110 sec) [ -16045.6527] [Topology ] . Checking for NNIs, optimizing five branches... . ( 133 sec) [ -16045.6488] [Alpha ][ 0.467545] . ( 134 sec) [ -16045.6488] [Topology ] . ( 137 sec) [ -16045.6485] [Topology ] . Checking for NNIs, optimizing five branches... . ( 160 sec) [ -16045.6485] [Alpha ][ 0.467545] . ( 160 sec) [ -16045.6485] [Topology ] . ( 163 sec) [ -16045.6484] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -16045.648355. . Printing the most likely tree in file 'proteic_M1378_18x1561_2003.phy_phyml_tree.txt'... . Time used 0h3m31s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 207.17user 0.00system 3:30.77elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps