..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M1379_9x1557_2003.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 NNIs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 720 patterns found. (out of a total of 1557 sites) 

. 838 sites without polymorphism (53.82%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 13Mo of memory space.

. Maximizing likelihood (using NNI moves)...

. (    0 sec) [    -11696.3996] [Alpha              ][  0.540948]
. (    0 sec) [    -11696.3996] [Topology           ]
. (    1 sec) [    -11646.2698] [Topology           ]
. (    2 sec) [    -11638.4399] [Topology           ]
. (    4 sec) [    -11637.5077] [Topology           ]
. (    5 sec) [    -11637.6377] [Topology           ]

. Moving backward

. (    6 sec) [    -11636.2660] [Topology           ]
. (    7 sec) [    -11635.5962] [Topology           ]
. (    8 sec) [    -11635.4972] [Topology           ]
. (    9 sec) [    -11635.4733] [Topology           ]
. (   10 sec) [    -11635.4666] [Topology           ]

. Checking for NNIs, optimizing five branches...

. (   19 sec) [    -11634.5566] [Alpha              ][  0.600647]
. (   19 sec) [    -11634.5566] [Topology           ]
. (   20 sec) [    -11634.5441] [Topology           ]
. (   21 sec) [    -11634.5430] [Topology           ]
. (   22 sec) [    -11634.5427] [Topology           ]

. Checking for NNIs, optimizing five branches...

. (   32 sec) [    -11634.5425] [Alpha              ][  0.601587]
. (   32 sec) [    -11634.5425] [Topology           ]
. (   33 sec) [    -11634.5424] [Topology           ]

. Checking for NNIs, optimizing five branches...


. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -11634.542422.

. Printing the most likely tree in file 'proteic_M1379_9x1557_2003.phy_phyml_tree.txt'...


. Time used 0h0m54s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
43.44user 0.00system 0:53.97elapsed 80%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps