.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1382_9x1560_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 719 patterns found. (out of a total of 1560 sites) . 822 sites without polymorphism (52.69%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 13Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 0 sec) [ -12403.8773] [Alpha ][ 0.502812] . ( 0 sec) [ -12403.8773] [Topology ] . ( 2 sec) [ -12365.6388] [Topology ] . ( 3 sec) [ -12360.3449] [Topology ] . ( 4 sec) [ -12346.2642] [Topology ] . ( 5 sec) [ -12337.4402] [Topology ] . ( 6 sec) [ -12336.6549] [Topology ] . ( 7 sec) [ -12336.4916] [Topology ] . ( 8 sec) [ -12336.4489] [Topology ] . ( 9 sec) [ -12336.4372] [Topology ] . ( 9 sec) [ -12336.4339] [Topology ] . Checking for NNIs, optimizing five branches... . ( 17 sec) [ -12335.2103] [Alpha ][ 0.562445] . ( 17 sec) [ -12335.2103] [Topology ] . ( 18 sec) [ -12335.1886] [Topology ] . ( 19 sec) [ -12335.1857] [Topology ] . ( 20 sec) [ -12335.1848] [Topology ] . Checking for NNIs, optimizing five branches... . ( 27 sec) [ -12335.1844] [Alpha ][ 0.563602] . ( 27 sec) [ -12335.1844] [Topology ] . ( 28 sec) [ -12335.1841] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -12335.184105. . Printing the most likely tree in file 'proteic_M1382_9x1560_2003.phy_phyml_tree.txt'... . Time used 0h0m47s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 41.89user 0.00system 0:47.98elapsed 87%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps