.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1383_11x1561_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 753 patterns found. (out of a total of 1561 sites) . 798 sites without polymorphism (51.12%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 17Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -13794.2183] [Alpha ][ 0.500960] . ( 1 sec) [ -13794.2183] [Topology ] . ( 2 sec) [ -13736.8319] [Topology ] . ( 4 sec) [ -13731.9263] [Topology ] . ( 5 sec) [ -13730.7630] [Topology ] . ( 7 sec) [ -13730.3890] [Topology ] . ( 8 sec) [ -13730.2582] [Topology ] . ( 9 sec) [ -13730.2107] [Topology ] . Checking for NNIs, optimizing five branches... . ( 19 sec) [ -13730.1591] [Alpha ][ 0.511243] . ( 19 sec) [ -13730.1591] [Topology ] . ( 21 sec) [ -13730.1343] [Topology ] . ( 22 sec) [ -13730.1252] [Topology ] . ( 23 sec) [ -13730.1219] [Topology ] . ( 24 sec) [ -13730.1206] [Topology ] . ( 26 sec) [ -13730.1201] [Topology ] . Checking for NNIs, optimizing five branches... . ( 36 sec) [ -13730.1192] [Alpha ][ 0.512575] . ( 36 sec) [ -13730.1192] [Topology ] . ( 37 sec) [ -13730.1190] [Topology ] . Checking for NNIs, optimizing five branches... . ( 49 sec) [ -13730.1190] [Alpha ][ 0.512575] . ( 49 sec) [ -13730.1190] [Topology ] . ( 51 sec) [ -13730.1189] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -13730.118863. . Printing the most likely tree in file 'proteic_M1383_11x1561_2003.phy_phyml_tree.txt'... . Time used 0h1m20s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 66.31user 0.00system 1:20.45elapsed 82%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps