.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1384_11x391_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 195 patterns found. (out of a total of 391 sites) . 216 sites without polymorphism (55.24%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 5Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 0 sec) [ -2896.3161] [Alpha ][ 0.545545] . ( 0 sec) [ -2896.3161] [Topology ] . ( 1 sec) [ -2884.4474] [Topology ] . ( 1 sec) [ -2883.2543] [Topology ] . ( 2 sec) [ -2883.0321] [Topology ] . ( 3 sec) [ -2882.9824] [Topology ] . ( 3 sec) [ -2882.9702] [Topology ] . ( 4 sec) [ -2882.9670] [Topology ] . ( 4 sec) [ -2882.9662] [Topology ] . Checking for NNIs, optimizing five branches... . ( 7 sec) [ -2882.7993] [Alpha ][ 0.599536] . ( 7 sec) [ -2882.7993] [Topology ] . ( 7 sec) [ -2882.7935] [Topology ] . ( 8 sec) [ -2882.7925] [Topology ] . ( 8 sec) [ -2882.7922] [Topology ] . Checking for NNIs, optimizing five branches... . ( 11 sec) [ -2882.7920] [Alpha ][ 0.601553] . ( 11 sec) [ -2882.7920] [Topology ] . ( 11 sec) [ -2882.7919] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -2882.791948. . Printing the most likely tree in file 'proteic_M1384_11x391_2003.phy_phyml_tree.txt'... . Time used 0h0m16s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 14.35user 0.00system 0:15.92elapsed 90%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps