.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1385_11x530_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 312 patterns found. (out of a total of 530 sites) . 226 sites without polymorphism (42.64%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 7Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 0 sec) [ -5642.0556] [Alpha ][ 0.522309] . ( 0 sec) [ -5642.0556] [Topology ] . ( 1 sec) [ -5615.4964] [Topology ] . ( 2 sec) [ -5612.0959] [Topology ] . ( 2 sec) [ -5611.4656] [Topology ] . ( 3 sec) [ -5611.3011] [Topology ] . ( 3 sec) [ -5611.2430] [Topology ] . ( 4 sec) [ -5611.2203] [Topology ] . ( 4 sec) [ -5611.2109] [Topology ] . ( 5 sec) [ -5611.2070] [Topology ] . Checking for NNIs, optimizing five branches... . ( 10 sec) [ -5610.8025] [Topology ] . ( 10 sec) [ -5609.5704] [Alpha ][ 0.608297] . ( 10 sec) [ -5609.5704] [Topology ] . ( 12 sec) [ -5609.4986] [Topology ] . ( 12 sec) [ -5609.4808] [Topology ] . ( 13 sec) [ -5609.4741] [Topology ] . ( 14 sec) [ -5609.4715] [Topology ] . ( 14 sec) [ -5609.4704] [Topology ] . ( 15 sec) [ -5609.4699] [Topology ] . Checking for NNIs, optimizing five branches... . ( 20 sec) [ -5609.4666] [Alpha ][ 0.613307] . ( 20 sec) [ -5609.4666] [Topology ] . ( 21 sec) [ -5609.4661] [Topology ] . Checking for NNIs, optimizing five branches... . ( 25 sec) [ -5609.4661] [Alpha ][ 0.613307] . ( 26 sec) [ -5609.4661] [Topology ] . ( 26 sec) [ -5609.4659] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -5609.465950. . Printing the most likely tree in file 'proteic_M1385_11x530_2003.phy_phyml_tree.txt'... . Time used 0h0m38s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 29.04user 0.00system 0:38.12elapsed 76%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps