.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1392_57x430_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 389 patterns found. (out of a total of 430 sites) . 150 sites without polymorphism (34.88%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 54Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 2 sec) [ -8287.8174] [Alpha ][ 0.500960] . ( 2 sec) [ -8287.8174] [Topology ] . ( 8 sec) [ -8220.7157] [Topology ] . ( 14 sec) [ -8204.4814] [Topology ] . ( 20 sec) [ -8189.3124] [Topology ] . ( 26 sec) [ -8184.9266] [Topology ] . ( 31 sec) [ -8182.8608] [Topology ] . ( 37 sec) [ -8181.0365] [Topology ] . ( 42 sec) [ -8179.1558] [Topology ] . ( 48 sec) [ -8177.7907] [Topology ] . ( 53 sec) [ -8177.0374] [Topology ] . Checking for NNIs, optimizing five branches... . ( 95 sec) [ -8176.8663] [Topology ] . ( 96 sec) [ -8176.2111] [Alpha ][ 0.546347] . ( 97 sec) [ -8176.2111] [Topology ] . ( 102 sec) [ -8176.0377] [Topology ] . ( 107 sec) [ -8175.9637] [Topology ] . ( 113 sec) [ -8175.9221] [Topology ] . ( 118 sec) [ -8175.8970] [Topology ] . ( 123 sec) [ -8175.8813] [Topology ] . ( 129 sec) [ -8175.8714] [Topology ] . Checking for NNIs, optimizing five branches... . ( 167 sec) [ -8174.8298] [Topology ] . ( 168 sec) [ -8174.8237] [Alpha ][ 0.551022] . ( 168 sec) [ -8174.8237] [Topology ] . ( 173 sec) [ -8174.6407] [Topology ] . ( 179 sec) [ -8174.6187] [Topology ] . ( 184 sec) [ -8174.6129] [Topology ] . ( 189 sec) [ -8174.6109] [Topology ] . ( 195 sec) [ -8174.6101] [Topology ] . Checking for NNIs, optimizing five branches... . ( 231 sec) [ -8174.6100] [Alpha ][ 0.551573] . ( 232 sec) [ -8174.6100] [Topology ] . ( 237 sec) [ -8174.6095] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -8174.609471. . Printing the most likely tree in file 'proteic_M1392_57x430_2003.phy_phyml_tree.txt'... . Time used 0h5m9s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 308.16user 0.00system 5:10.66elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps