.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1487_52x981_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 623 patterns found. (out of a total of 981 sites) . 470 sites without polymorphism (47.91%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 78Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 3 sec) [ -16605.2876] [Alpha ][ 0.500960] . ( 4 sec) [ -16605.2876] [Topology ] . ( 11 sec) [ -16414.2448] [Topology ] . ( 18 sec) [ -16352.8333] [Topology ] . ( 26 sec) [ -16338.9484] [Topology ] . ( 33 sec) [ -16328.2423] [Topology ] . ( 41 sec) [ -16325.0301] [Topology ] . ( 49 sec) [ -16323.8529] [Topology ] . ( 57 sec) [ -16322.4261] [Topology ] . ( 65 sec) [ -16319.2864] [Topology ] . ( 72 sec) [ -16312.8466] [Topology ] . ( 81 sec) [ -16294.9689] [Alpha ][ 0.387752] . ( 82 sec) [ -16294.9689] [Topology ] . ( 90 sec) [ -16292.1804] [Topology ] . ( 98 sec) [ -16291.4873] [Topology ] . ( 105 sec) [ -16291.2953] [Topology ] . ( 113 sec) [ -16291.2163] [Topology ] . ( 121 sec) [ -16291.1787] [Topology ] . ( 129 sec) [ -16291.1592] [Topology ] . ( 136 sec) [ -16291.1484] [Topology ] . Checking for NNIs, optimizing five branches... . ( 199 sec) [ -16291.0909] [Alpha ][ 0.381762] . ( 200 sec) [ -16291.0909] [Topology ] . ( 207 sec) [ -16291.0737] [Topology ] . ( 215 sec) [ -16291.0635] [Topology ] . ( 223 sec) [ -16291.0572] [Topology ] . ( 231 sec) [ -16291.0534] [Topology ] . ( 238 sec) [ -16291.0510] [Topology ] . ( 246 sec) [ -16291.0495] [Topology ] . Checking for NNIs, optimizing five branches... . ( 309 sec) [ -16291.0454] [Alpha ][ 0.380025] . ( 309 sec) [ -16291.0454] [Topology ] . ( 317 sec) [ -16291.0433] [Topology ] . ( 325 sec) [ -16291.0420] [Topology ] . ( 333 sec) [ -16291.0412] [Topology ] . Checking for NNIs, optimizing five branches... . ( 395 sec) [ -16291.0411] [Alpha ][ 0.379644] . ( 396 sec) [ -16291.0411] [Topology ] . ( 404 sec) [ -16291.0404] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -16291.040410. . Printing the most likely tree in file 'proteic_M1487_52x981_2003.phy_phyml_tree.txt'... . Time used 0h8m48s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 527.55user 0.00system 8:49.87elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps