.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1499_22x513_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 440 patterns found. (out of a total of 513 sites) . 87 sites without polymorphism (16.96%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 22Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 0 sec) [ -12557.6395] [Alpha ][ 0.856477] . ( 0 sec) [ -12557.6395] [Topology ] . ( 2 sec) [ -12484.9190] [Topology ] . ( 4 sec) [ -12478.1976] [Topology ] . ( 6 sec) [ -12476.2470] [Topology ] . ( 8 sec) [ -12475.3143] [Topology ] . ( 10 sec) [ -12474.7983] [Topology ] . ( 11 sec) [ -12474.4984] [Topology ] . Checking for NNIs, optimizing five branches... . ( 28 sec) [ -12472.2624] [Alpha ][ 0.994811] . ( 28 sec) [ -12472.2624] [Topology ] . ( 30 sec) [ -12471.9802] [Topology ] . ( 32 sec) [ -12471.8311] [Topology ] . ( 33 sec) [ -12471.7482] [Topology ] . ( 35 sec) [ -12471.7019] [Topology ] . ( 37 sec) [ -12471.6755] [Topology ] . ( 39 sec) [ -12471.6607] [Topology ] . Checking for NNIs, optimizing five branches... . ( 55 sec) [ -12471.6582] [Alpha ][ 0.999840] . ( 55 sec) [ -12471.6582] [Topology ] . ( 57 sec) [ -12471.6496] [Topology ] . ( 59 sec) [ -12471.6447] [Topology ] . ( 61 sec) [ -12471.6419] [Topology ] . ( 62 sec) [ -12471.6404] [Topology ] . ( 64 sec) [ -12471.6395] [Topology ] . Checking for NNIs, optimizing five branches... . ( 81 sec) [ -12471.6395] [Alpha ][ 0.999840] . ( 81 sec) [ -12471.6395] [Topology ] . ( 83 sec) [ -12471.6389] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -12471.638936. . Printing the most likely tree in file 'proteic_M1499_22x513_2003.phy_phyml_tree.txt'... . Time used 0h2m1s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 113.71user 0.00system 2:01.22elapsed 93%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps