.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1503_23x479_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 356 patterns found. (out of a total of 479 sites) . 140 sites without polymorphism (29.23%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 19Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -9920.9916] [Alpha ][ 0.500960] . ( 1 sec) [ -9920.9916] [Topology ] . ( 2 sec) [ -9858.0273] [Topology ] . ( 4 sec) [ -9854.1883] [Topology ] . ( 5 sec) [ -9853.4558] [Topology ] . ( 8 sec) [ -9853.2048] [Topology ] . ( 9 sec) [ -9853.1061] [Topology ] . ( 11 sec) [ -9853.0648] [Topology ] . ( 13 sec) [ -9853.0467] [Topology ] . Checking for NNIs, optimizing five branches... . ( 26 sec) [ -9851.5926] [Alpha ][ 0.563972] . ( 26 sec) [ -9851.5926] [Topology ] . ( 28 sec) [ -9851.3146] [Topology ] . ( 29 sec) [ -9851.2161] [Topology ] . ( 31 sec) [ -9851.1749] [Topology ] . ( 33 sec) [ -9851.1568] [Topology ] . ( 34 sec) [ -9851.1487] [Topology ] . ( 36 sec) [ -9851.1450] [Topology ] . Checking for NNIs, optimizing five branches... . ( 49 sec) [ -9851.0669] [Alpha ][ 0.579529] . ( 50 sec) [ -9851.0669] [Topology ] . ( 51 sec) [ -9851.0496] [Topology ] . ( 53 sec) [ -9851.0429] [Topology ] . ( 55 sec) [ -9851.0400] [Topology ] . ( 56 sec) [ -9851.0387] [Topology ] . ( 58 sec) [ -9851.0381] [Topology ] . Checking for NNIs, optimizing five branches... . ( 71 sec) [ -9851.0335] [Alpha ][ 0.583469] . ( 71 sec) [ -9851.0335] [Topology ] . ( 73 sec) [ -9851.0320] [Topology ] . ( 75 sec) [ -9851.0314] [Topology ] . Checking for NNIs, optimizing five branches... . ( 88 sec) [ -9851.0312] [Alpha ][ 0.584097] . ( 88 sec) [ -9851.0312] [Topology ] . ( 90 sec) [ -9851.0309] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -9851.030860. . Printing the most likely tree in file 'proteic_M1503_23x479_2003.phy_phyml_tree.txt'... . Time used 0h2m0s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 115.87user 0.00system 2:00.85elapsed 95%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps