.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1504_37x547_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 429 patterns found. (out of a total of 547 sites) . 136 sites without polymorphism (24.86%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 38Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -12688.8590] [Alpha ][ 0.659988] . ( 1 sec) [ -12688.8590] [Topology ] . ( 5 sec) [ -12601.2388] [Topology ] . ( 9 sec) [ -12591.8603] [Topology ] . ( 13 sec) [ -12590.3330] [Topology ] . ( 16 sec) [ -12589.7518] [Topology ] . ( 20 sec) [ -12589.4532] [Topology ] . ( 24 sec) [ -12589.2792] [Topology ] . ( 27 sec) [ -12589.1721] [Topology ] . Checking for NNIs, optimizing five branches... . ( 56 sec) [ -12586.5064] [Alpha ][ 0.768607] . ( 56 sec) [ -12586.5064] [Topology ] . ( 60 sec) [ -12586.1292] [Topology ] . ( 64 sec) [ -12585.9206] [Topology ] . ( 67 sec) [ -12585.7972] [Topology ] . ( 71 sec) [ -12585.7230] [Topology ] . ( 75 sec) [ -12585.6778] [Topology ] . ( 79 sec) [ -12585.6500] [Topology ] . Checking for NNIs, optimizing five branches... . ( 107 sec) [ -12585.6047] [Alpha ][ 0.784498] . ( 107 sec) [ -12585.6047] [Topology ] . ( 111 sec) [ -12585.5782] [Topology ] . ( 115 sec) [ -12585.5622] [Topology ] . ( 118 sec) [ -12585.5523] [Topology ] . ( 122 sec) [ -12585.5463] [Topology ] . ( 126 sec) [ -12585.5425] [Topology ] . ( 130 sec) [ -12585.5402] [Topology ] . Checking for NNIs, optimizing five branches... . ( 158 sec) [ -12585.5386] [Alpha ][ 0.787411] . ( 158 sec) [ -12585.5386] [Topology ] . ( 162 sec) [ -12585.5367] [Topology ] . ( 166 sec) [ -12585.5356] [Topology ] . ( 169 sec) [ -12585.5348] [Topology ] . Checking for NNIs, optimizing five branches... . ( 198 sec) [ -12585.5348] [Alpha ][ 0.788198] . ( 198 sec) [ -12585.5348] [Topology ] . ( 202 sec) [ -12585.5343] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -12585.534289. . Printing the most likely tree in file 'proteic_M1504_37x547_2003.phy_phyml_tree.txt'... . Time used 0h4m19s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 258.34user 0.00system 4:19.24elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps