.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1508_22x431_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 172 patterns found. (out of a total of 431 sites) . 298 sites without polymorphism (69.14%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 9Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -3189.9244] [Alpha ][ 0.500960] . ( 1 sec) [ -3189.9244] [Topology ] . ( 2 sec) [ -3169.1490] [Topology ] . ( 4 sec) [ -3166.4088] [Topology ] . ( 5 sec) [ -3166.3187] [Topology ] . ( 6 sec) [ -3165.6320] [Topology ] . ( 7 sec) [ -3165.9418] [Topology ] . Moving backward . ( 7 sec) [ -3164.4686] [Topology ] . ( 8 sec) [ -3164.3597] [Topology ] . ( 9 sec) [ -3164.3433] [Topology ] . ( 10 sec) [ -3164.3398] [Topology ] . Checking for NNIs, optimizing five branches... . ( 18 sec) [ -3155.1388] [Alpha ][ 0.275768] . ( 18 sec) [ -3155.1388] [Topology ] . ( 20 sec) [ -3155.0993] [Topology ] . ( 21 sec) [ -3155.0947] [Topology ] . ( 22 sec) [ -3155.0933] [Topology ] . ( 23 sec) [ -3155.0929] [Topology ] . Checking for NNIs, optimizing five branches... . ( 31 sec) [ -3155.0918] [Alpha ][ 0.274054] . ( 31 sec) [ -3155.0918] [Topology ] . ( 32 sec) [ -3155.0915] [Topology ] . Checking for NNIs, optimizing five branches... . ( 39 sec) [ -3155.0915] [Alpha ][ 0.274054] . ( 39 sec) [ -3155.0915] [Topology ] . ( 40 sec) [ -3155.0913] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -3155.091315. . Printing the most likely tree in file 'proteic_M1508_22x431_2003.phy_phyml_tree.txt'... . Time used 0h0m53s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 46.12user 0.00system 0:52.59elapsed 87%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps