.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1601_36x340_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 322 patterns found. (out of a total of 340 sites) . 79 sites without polymorphism (23.24%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 28Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -7041.5767] [Alpha ][ 1.039970] . ( 1 sec) [ -7041.5767] [Topology ] . ( 4 sec) [ -6954.7233] [Topology ] . ( 7 sec) [ -6937.3995] [Topology ] . ( 11 sec) [ -6929.6201] [Topology ] . ( 14 sec) [ -6925.4982] [Topology ] . ( 17 sec) [ -6923.5250] [Topology ] . ( 20 sec) [ -6923.0761] [Topology ] . ( 23 sec) [ -6922.8111] [Topology ] . ( 27 sec) [ -6922.4654] [Topology ] . ( 30 sec) [ -6921.7624] [Topology ] . Checking for NNIs, optimizing five branches... . ( 54 sec) [ -6921.4194] [Alpha ][ 1.108338] . ( 54 sec) [ -6921.4194] [Topology ] . ( 57 sec) [ -6921.3642] [Topology ] . ( 60 sec) [ -6921.3434] [Topology ] . ( 63 sec) [ -6921.3336] [Topology ] . ( 66 sec) [ -6921.3286] [Topology ] . ( 69 sec) [ -6921.3259] [Topology ] . ( 72 sec) [ -6921.3244] [Topology ] . Checking for NNIs, optimizing five branches... . ( 94 sec) [ -6921.3244] [Alpha ][ 1.107229] . ( 94 sec) [ -6921.3244] [Topology ] . ( 97 sec) [ -6921.3235] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -6921.323469. . Printing the most likely tree in file 'proteic_M1601_36x340_2003.phy_phyml_tree.txt'... . Time used 0h2m19s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 138.07user 0.00system 2:18.94elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps