.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1812_34x176_2004.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 173 patterns found. (out of a total of 176 sites) . 16 sites without polymorphism (9.09%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 14Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -5450.8068] [Alpha ][ 1.505579] . ( 1 sec) [ -5450.8068] [Topology ] . ( 2 sec) [ -5428.0477] [Topology ] . ( 4 sec) [ -5424.1790] [Topology ] . ( 6 sec) [ -5422.1045] [Topology ] . ( 8 sec) [ -5421.4064] [Topology ] . ( 11 sec) [ -5421.1991] [Topology ] . ( 13 sec) [ -5421.1186] [Topology ] . ( 15 sec) [ -5421.0845] [Topology ] . ( 17 sec) [ -5421.0693] [Topology ] . ( 18 sec) [ -5421.0622] [Topology ] . Checking for NNIs, optimizing five branches... . ( 30 sec) [ -5420.7479] [Topology ] . ( 30 sec) [ -5420.5957] [Alpha ][ 1.611532] . ( 30 sec) [ -5420.5957] [Topology ] . ( 32 sec) [ -5420.5417] [Topology ] . ( 33 sec) [ -5420.5324] [Topology ] . ( 35 sec) [ -5420.5297] [Topology ] . ( 36 sec) [ -5420.5288] [Topology ] . Checking for NNIs, optimizing five branches... . ( 47 sec) [ -5420.5287] [Alpha ][ 1.614399] . ( 47 sec) [ -5420.5287] [Topology ] . ( 49 sec) [ -5420.5283] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -5420.528259. . Printing the most likely tree in file 'proteic_M1812_34x176_2004.phy_phyml_tree.txt'... . Time used 0h1m10s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 63.71user 0.00system 1:09.77elapsed 91%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps