.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1882_8x705_2004.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 524 patterns found. (out of a total of 705 sites) . 233 sites without polymorphism (33.05%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 8Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 0 sec) [ -6233.3784] [Alpha ][ 1.337069] . ( 0 sec) [ -6233.3784] [Topology ] . ( 1 sec) [ -6202.1031] [Topology ] . ( 2 sec) [ -6199.6839] [Topology ] . ( 3 sec) [ -6199.1480] [Topology ] . ( 4 sec) [ -6198.9865] [Topology ] . ( 5 sec) [ -6198.9339] [Topology ] . ( 5 sec) [ -6198.9156] [Topology ] . Checking for NNIs, optimizing five branches... . ( 14 sec) [ -6196.3146] [Topology ] . ( 15 sec) [ -6193.2251] [Alpha ][ 1.023146] . ( 15 sec) [ -6193.2251] [Topology ] . ( 16 sec) [ -6192.5234] [Topology ] . ( 17 sec) [ -6192.3736] [Topology ] . ( 17 sec) [ -6192.3359] [Topology ] . ( 18 sec) [ -6192.3259] [Topology ] . ( 19 sec) [ -6192.3231] [Topology ] . ( 20 sec) [ -6192.3222] [Topology ] . Checking for NNIs, optimizing five branches... . ( 28 sec) [ -6192.0976] [Alpha ][ 0.957346] . ( 28 sec) [ -6192.0976] [Topology ] . ( 29 sec) [ -6192.0396] [Topology ] . ( 30 sec) [ -6192.0253] [Topology ] . ( 30 sec) [ -6192.0212] [Topology ] . ( 31 sec) [ -6192.0199] [Topology ] . ( 32 sec) [ -6192.0194] [Topology ] . Checking for NNIs, optimizing five branches... . ( 40 sec) [ -6191.9983] [Alpha ][ 0.938624] . ( 40 sec) [ -6191.9983] [Topology ] . ( 41 sec) [ -6191.9921] [Topology ] . ( 42 sec) [ -6191.9904] [Topology ] . ( 43 sec) [ -6191.9899] [Topology ] . Checking for NNIs, optimizing five branches... . ( 51 sec) [ -6191.9879] [Alpha ][ 0.932536] . ( 51 sec) [ -6191.9879] [Topology ] . ( 51 sec) [ -6191.9867] [Topology ] . ( 52 sec) [ -6191.9863] [Topology ] . Checking for NNIs, optimizing five branches... . ( 60 sec) [ -6191.9861] [Alpha ][ 0.930641] . ( 60 sec) [ -6191.9861] [Topology ] . ( 61 sec) [ -6191.9858] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -6191.985837. . Printing the most likely tree in file 'proteic_M1882_8x705_2004.phy_phyml_tree.txt'... . Time used 0h1m17s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 74.15user 0.00system 1:16.88elapsed 96%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps