.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1992_46x68_2004.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 68 patterns found. (out of a total of 68 sites) . 1 sites without polymorphism (1.47%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 9Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -3015.2739] [Alpha ][ 1.996970] . ( 1 sec) [ -3015.2739] [Topology ] . ( 2 sec) [ -2947.5324] [Topology ] . ( 3 sec) [ -2935.3074] [Topology ] . ( 4 sec) [ -2930.3388] [Topology ] . ( 5 sec) [ -2927.4368] [Topology ] . ( 6 sec) [ -2926.9560] [Topology ] . ( 7 sec) [ -2926.8177] [Topology ] . ( 8 sec) [ -2926.7584] [Topology ] . ( 9 sec) [ -2926.7265] [Topology ] . ( 10 sec) [ -2926.7072] [Topology ] . Checking for NNIs, optimizing five branches... . ( 17 sec) [ -2926.5115] [Topology ] . ( 18 sec) [ -2922.8546] [Alpha ][ 3.815477] . ( 18 sec) [ -2922.8546] [Topology ] . ( 19 sec) [ -2921.6808] [Topology ] . ( 20 sec) [ -2921.4624] [Topology ] . ( 21 sec) [ -2921.4165] [Topology ] . ( 21 sec) [ -2921.4036] [Topology ] . ( 22 sec) [ -2921.3998] [Topology ] . ( 23 sec) [ -2921.3987] [Topology ] . ( 24 sec) [ -2921.3983] [Topology ] . Checking for NNIs, optimizing five branches... . ( 31 sec) [ -2921.3961] [Alpha ][ 3.883619] . ( 31 sec) [ -2921.3961] [Topology ] . ( 32 sec) [ -2921.3960] [Topology ] . Checking for NNIs, optimizing five branches... . ( 40 sec) [ -2921.3960] [Alpha ][ 3.883619] . ( 40 sec) [ -2921.3960] [Topology ] . ( 41 sec) [ -2921.3959] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -2921.395934. . Printing the most likely tree in file 'proteic_M1992_46x68_2004.phy_phyml_tree.txt'... . Time used 0h0m55s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 52.92user 0.00system 0:55.44elapsed 95%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps