..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M2345_7x232_2005.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 NNIs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 145 patterns found. (out of a total of 232 sites) 

. 124 sites without polymorphism (53.45%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 2Mo of memory space.

. Maximizing likelihood (using NNI moves)...

. (    0 sec) [     -1585.9438] [Alpha              ][  1.316624]
. (    0 sec) [     -1585.9438] [Topology           ]
. (    0 sec) [     -1583.6530] [Topology           ]
. (    1 sec) [     -1583.5036] [Topology           ]
. (    1 sec) [     -1583.4820] [Topology           ]
. (    1 sec) [     -1583.4784] [Topology           ]
. (    1 sec) [     -1583.4778] [Topology           ]

. Checking for NNIs, optimizing five branches...

. (    2 sec) [     -1583.4588] [Alpha              ][  1.234717]
. (    2 sec) [     -1583.4588] [Topology           ]
. (    2 sec) [     -1583.4578] [Topology           ]
. (    3 sec) [     -1583.4577] [Topology           ]

. Checking for NNIs, optimizing five branches...

. (    4 sec) [     -1583.4577] [Alpha              ][  1.231290]
. (    4 sec) [     -1583.4577] [Topology           ]
. (    4 sec) [     -1583.4577] [Topology           ]

. Checking for NNIs, optimizing five branches...


. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -1583.457678.

. Printing the most likely tree in file 'proteic_M2345_7x232_2005.phy_phyml_tree.txt'...


. Time used 0h0m6s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
6.28user 0.00system 0:06.39elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps