.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2363_38x251_2004.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 244 patterns found. (out of a total of 251 sites) . 24 sites without polymorphism (9.56%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 23Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -12114.3207] [Alpha ][ 1.997534] . ( 1 sec) [ -12114.3207] [Topology ] . ( 3 sec) [ -11847.1433] [Topology ] . ( 5 sec) [ -11810.2247] [Topology ] . ( 7 sec) [ -11796.2352] [Topology ] . ( 9 sec) [ -11790.5252] [Topology ] . ( 11 sec) [ -11788.1025] [Topology ] . ( 13 sec) [ -11786.3193] [Topology ] . ( 15 sec) [ -11785.5495] [Topology ] . ( 18 sec) [ -11784.6404] [Topology ] . ( 20 sec) [ -11784.4428] [Topology ] . ( 22 sec) [ -11768.0697] [Alpha ][ 3.989233] . ( 22 sec) [ -11768.0697] [Topology ] . ( 24 sec) [ -11766.7822] [Topology ] . ( 27 sec) [ -11765.7933] [Topology ] . ( 29 sec) [ -11762.8575] [Topology ] . ( 31 sec) [ -11751.5301] [Topology ] . ( 33 sec) [ -11737.3391] [Topology ] . ( 36 sec) [ -11732.6310] [Topology ] . ( 38 sec) [ -11730.8705] [Topology ] . ( 40 sec) [ -11729.8731] [Topology ] . ( 42 sec) [ -11729.3523] [Topology ] . Checking for NNIs, optimizing five branches... . ( 71 sec) [ -11728.4647] [Topology ] . ( 71 sec) [ -11726.0651] [Alpha ][ 5.641331] . ( 71 sec) [ -11726.0651] [Topology ] . ( 74 sec) [ -11725.2420] [Topology ] . ( 76 sec) [ -11724.9469] [Topology ] . ( 78 sec) [ -11724.7936] [Topology ] . ( 81 sec) [ -11724.7028] [Topology ] . ( 83 sec) [ -11724.6433] [Topology ] . ( 85 sec) [ -11724.6014] [Topology ] . Checking for NNIs, optimizing five branches... . ( 112 sec) [ -11724.0547] [Topology ] . ( 113 sec) [ -11723.8042] [Alpha ][ 6.378908] . ( 113 sec) [ -11723.8042] [Topology ] . ( 115 sec) [ -11723.5699] [Topology ] . ( 117 sec) [ -11723.5038] [Topology ] . ( 120 sec) [ -11723.4695] [Topology ] . ( 122 sec) [ -11723.4462] [Topology ] . ( 124 sec) [ -11723.4284] [Topology ] . ( 127 sec) [ -11723.4139] [Topology ] . Checking for NNIs, optimizing five branches... . ( 152 sec) [ -11723.4136] [Topology ] . ( 153 sec) [ -11723.3871] [Alpha ][ 6.650675] . ( 153 sec) [ -11723.3871] [Topology ] . ( 156 sec) [ -11723.3677] [Topology ] . ( 158 sec) [ -11723.3473] [Topology ] . ( 162 sec) [ -11723.3235] [Topology ] . ( 165 sec) [ -11723.3043] [Topology ] . ( 168 sec) [ -11723.2885] [Topology ] . ( 171 sec) [ -11723.2756] [Topology ] . Checking for NNIs, optimizing five branches... . ( 199 sec) [ -11723.2744] [Alpha ][ 6.711318] . ( 199 sec) [ -11723.2744] [Topology ] . ( 202 sec) [ -11723.2635] [Topology ] . ( 204 sec) [ -11723.2547] [Topology ] . ( 206 sec) [ -11723.2475] [Topology ] . ( 209 sec) [ -11723.2417] [Topology ] . ( 211 sec) [ -11723.2369] [Topology ] . ( 214 sec) [ -11723.2330] [Topology ] . Checking for NNIs, optimizing five branches... . ( 242 sec) [ -11723.2328] [Alpha ][ 6.735009] . ( 242 sec) [ -11723.2328] [Topology ] . ( 245 sec) [ -11723.2296] [Topology ] . ( 247 sec) [ -11723.2271] [Topology ] . ( 250 sec) [ -11723.2250] [Topology ] . ( 253 sec) [ -11723.2233] [Topology ] . ( 255 sec) [ -11723.2220] [Topology ] . ( 258 sec) [ -11723.2209] [Topology ] . Checking for NNIs, optimizing five branches... . ( 283 sec) [ -11723.2208] [Alpha ][ 6.745605] . ( 283 sec) [ -11723.2208] [Topology ] . ( 286 sec) [ -11723.2199] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -11723.219946. . Printing the most likely tree in file 'proteic_M2363_38x251_2004.phy_phyml_tree.txt'... . Time used 0h5m42s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 320.99user 0.00system 5:42.77elapsed 93%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps