.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2382_28x162_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 129 patterns found. (out of a total of 162 sites) . 75 sites without polymorphism (46.30%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 9Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 0 sec) [ -2775.6744] [Alpha ][ 0.500960] . ( 0 sec) [ -2775.6744] [Topology ] . ( 1 sec) [ -2730.2341] [Topology ] . ( 2 sec) [ -2719.9969] [Topology ] . ( 3 sec) [ -2718.4262] [Topology ] . ( 4 sec) [ -2717.6659] [Topology ] . ( 5 sec) [ -2717.6758] [Topology ] . Moving backward . ( 5 sec) [ -2717.0282] [Topology ] . ( 6 sec) [ -2716.6701] [Topology ] . ( 6 sec) [ -2716.5370] [Topology ] . ( 7 sec) [ -2716.4326] [Topology ] . Checking for NNIs, optimizing five branches... . ( 15 sec) [ -2712.7833] [Alpha ][ 0.369792] . ( 15 sec) [ -2712.7833] [Topology ] . ( 16 sec) [ -2712.6795] [Topology ] . ( 17 sec) [ -2712.6614] [Topology ] . ( 18 sec) [ -2712.6561] [Topology ] . ( 19 sec) [ -2712.6542] [Topology ] . ( 20 sec) [ -2712.6534] [Topology ] . Checking for NNIs, optimizing five branches... . ( 26 sec) [ -2712.4946] [Topology ] . ( 26 sec) [ -2712.4788] [Alpha ][ 0.362808] . ( 26 sec) [ -2712.4788] [Topology ] . ( 27 sec) [ -2712.4666] [Topology ] . ( 28 sec) [ -2712.4622] [Topology ] . ( 29 sec) [ -2712.4600] [Topology ] . ( 29 sec) [ -2712.4589] [Topology ] . ( 30 sec) [ -2712.4584] [Topology ] . Checking for NNIs, optimizing five branches... . ( 37 sec) [ -2712.4580] [Alpha ][ 0.363809] . ( 37 sec) [ -2712.4580] [Topology ] . ( 37 sec) [ -2712.4577] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -2712.457654. . Printing the most likely tree in file 'proteic_M2382_28x162_2005.phy_phyml_tree.txt'... . Time used 0h0m53s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 48.43user 0.00system 0:53.27elapsed 90%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps