.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2476_30x719_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 620 patterns found. (out of a total of 719 sites) . 115 sites without polymorphism (15.99%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 44Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -24774.5534] [Alpha ][ 0.568788] . ( 1 sec) [ -24774.5534] [Topology ] . ( 5 sec) [ -24604.5727] [Topology ] . ( 9 sec) [ -24577.4142] [Topology ] . ( 12 sec) [ -24569.8172] [Topology ] . ( 16 sec) [ -24566.0500] [Topology ] . ( 19 sec) [ -24563.8019] [Topology ] . ( 23 sec) [ -24562.4009] [Topology ] . ( 27 sec) [ -24561.5110] [Topology ] . ( 30 sec) [ -24560.9388] [Topology ] . Checking for NNIs, optimizing five branches... . ( 61 sec) [ -24551.4355] [Alpha ][ 0.694186] . ( 62 sec) [ -24551.4355] [Topology ] . ( 65 sec) [ -24550.1640] [Topology ] . ( 69 sec) [ -24549.5953] [Topology ] . ( 72 sec) [ -24549.2553] [Topology ] . ( 76 sec) [ -24549.0455] [Topology ] . ( 80 sec) [ -24548.9148] [Topology ] . ( 83 sec) [ -24548.8327] [Topology ] . Checking for NNIs, optimizing five branches... . ( 114 sec) [ -24548.7536] [Alpha ][ 0.707150] . ( 115 sec) [ -24548.7536] [Topology ] . ( 118 sec) [ -24548.6901] [Topology ] . ( 122 sec) [ -24548.6518] [Topology ] . ( 125 sec) [ -24548.6279] [Topology ] . ( 129 sec) [ -24548.6128] [Topology ] . ( 133 sec) [ -24548.6033] [Topology ] . ( 136 sec) [ -24548.5973] [Topology ] . Checking for NNIs, optimizing five branches... . ( 167 sec) [ -24548.5961] [Alpha ][ 0.708722] . ( 167 sec) [ -24548.5961] [Topology ] . ( 171 sec) [ -24548.5920] [Topology ] . ( 174 sec) [ -24548.5894] [Topology ] . ( 178 sec) [ -24548.5878] [Topology ] . ( 182 sec) [ -24548.5867] [Topology ] . ( 185 sec) [ -24548.5861] [Topology ] . Checking for NNIs, optimizing five branches... . ( 216 sec) [ -24548.5861] [Alpha ][ 0.709431] . ( 216 sec) [ -24548.5861] [Topology ] . ( 219 sec) [ -24548.5856] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -24548.585605. . Printing the most likely tree in file 'proteic_M2476_30x719_2005.phy_phyml_tree.txt'... . Time used 0h4m40s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 278.36user 0.00system 4:40.53elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps