.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2477_39x888_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 638 patterns found. (out of a total of 888 sites) . 262 sites without polymorphism (29.50%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 59Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 3 sec) [ -21417.6215] [Alpha ][ 0.500960] . ( 3 sec) [ -21417.6215] [Topology ] . ( 8 sec) [ -21227.1384] [Topology ] . ( 13 sec) [ -21194.3140] [Topology ] . ( 18 sec) [ -21178.6341] [Topology ] . ( 23 sec) [ -21171.3173] [Topology ] . ( 28 sec) [ -21167.7367] [Topology ] . ( 34 sec) [ -21165.9194] [Topology ] . ( 39 sec) [ -21164.9681] [Topology ] . ( 44 sec) [ -21164.4654] [Topology ] . ( 49 sec) [ -21164.1966] [Topology ] . Checking for NNIs, optimizing five branches... . ( 95 sec) [ -21163.8223] [Alpha ][ 0.520309] . ( 95 sec) [ -21163.8223] [Topology ] . ( 100 sec) [ -21163.6457] [Topology ] . ( 105 sec) [ -21163.5527] [Topology ] . ( 111 sec) [ -21163.5018] [Topology ] . ( 116 sec) [ -21163.4739] [Topology ] . ( 121 sec) [ -21163.4586] [Topology ] . ( 126 sec) [ -21163.4502] [Topology ] . Checking for NNIs, optimizing five branches... . ( 171 sec) [ -21163.4475] [Alpha ][ 0.521963] . ( 171 sec) [ -21163.4475] [Topology ] . ( 177 sec) [ -21163.4425] [Topology ] . ( 182 sec) [ -21163.4397] [Topology ] . ( 187 sec) [ -21163.4382] [Topology ] . ( 192 sec) [ -21163.4373] [Topology ] . Checking for NNIs, optimizing five branches... . ( 237 sec) [ -21163.4373] [Alpha ][ 0.521963] . ( 237 sec) [ -21163.4373] [Topology ] . ( 242 sec) [ -21163.4368] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -21163.436847. . Printing the most likely tree in file 'proteic_M2477_39x888_2005.phy_phyml_tree.txt'... . Time used 0h5m31s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 326.78user 0.00system 5:31.56elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps