.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2478_30x276_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 249 patterns found. (out of a total of 276 sites) . 41 sites without polymorphism (14.86%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 18Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 0 sec) [ -8811.1519] [Alpha ][ 0.880454] . ( 1 sec) [ -8811.1519] [Topology ] . ( 2 sec) [ -8746.8962] [Topology ] . ( 4 sec) [ -8734.3709] [Topology ] . ( 6 sec) [ -8732.6388] [Topology ] . ( 7 sec) [ -8732.0970] [Topology ] . ( 9 sec) [ -8730.9948] [Topology ] . ( 11 sec) [ -8728.4784] [Topology ] . ( 12 sec) [ -8726.6266] [Topology ] . ( 14 sec) [ -8726.2606] [Topology ] . ( 16 sec) [ -8726.1914] [Topology ] . Checking for NNIs, optimizing five branches... . ( 31 sec) [ -8725.4787] [Alpha ][ 0.974173] . ( 31 sec) [ -8725.4787] [Topology ] . ( 33 sec) [ -8725.4256] [Topology ] . ( 34 sec) [ -8725.4069] [Topology ] . ( 36 sec) [ -8725.3977] [Topology ] . ( 38 sec) [ -8725.3930] [Topology ] . ( 40 sec) [ -8725.3904] [Topology ] . ( 41 sec) [ -8725.3890] [Topology ] . Checking for NNIs, optimizing five branches... . ( 55 sec) [ -8725.3805] [Alpha ][ 0.985455] . ( 55 sec) [ -8725.3805] [Topology ] . ( 57 sec) [ -8725.3781] [Topology ] . ( 58 sec) [ -8725.3770] [Topology ] . ( 60 sec) [ -8725.3763] [Topology ] . Checking for NNIs, optimizing five branches... . ( 73 sec) [ -8725.3762] [Alpha ][ 0.986897] . ( 73 sec) [ -8725.3762] [Topology ] . ( 75 sec) [ -8725.3758] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -8725.375765. . Printing the most likely tree in file 'proteic_M2478_30x276_2005.phy_phyml_tree.txt'... . Time used 0h1m43s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 100.96user 0.00system 1:43.24elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps