.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2479_30x627_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 521 patterns found. (out of a total of 627 sites) . 123 sites without polymorphism (19.62%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 37Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 0 sec) [ -18178.5487] [Alpha ][ 0.611907] . ( 1 sec) [ -18178.5487] [Topology ] . ( 3 sec) [ -18078.2315] [Topology ] . ( 7 sec) [ -18069.5546] [Topology ] . ( 10 sec) [ -18067.9397] [Topology ] . ( 13 sec) [ -18067.8156] [Topology ] . ( 16 sec) [ -18067.4540] [Topology ] . ( 19 sec) [ -18067.6241] [Topology ] . Moving backward . ( 20 sec) [ -18066.7104] [Topology ] . ( 23 sec) [ -18066.3550] [Topology ] . ( 26 sec) [ -18066.3089] [Topology ] . Checking for NNIs, optimizing five branches... . ( 54 sec) [ -18061.5099] [Alpha ][ 0.723516] . ( 55 sec) [ -18061.5099] [Topology ] . ( 58 sec) [ -18060.8363] [Topology ] . ( 61 sec) [ -18060.5480] [Topology ] . ( 64 sec) [ -18060.4022] [Topology ] . ( 67 sec) [ -18060.3259] [Topology ] . ( 70 sec) [ -18060.2846] [Topology ] . ( 73 sec) [ -18060.2625] [Topology ] . Checking for NNIs, optimizing five branches... . ( 98 sec) [ -18060.0867] [Alpha ][ 0.746673] . ( 98 sec) [ -18060.0867] [Topology ] . ( 101 sec) [ -18060.0368] [Topology ] . ( 105 sec) [ -18060.0115] [Topology ] . ( 108 sec) [ -18059.9979] [Topology ] . ( 111 sec) [ -18059.9904] [Topology ] . ( 114 sec) [ -18059.9863] [Topology ] . ( 117 sec) [ -18059.9841] [Topology ] . Checking for NNIs, optimizing five branches... . ( 142 sec) [ -18059.9715] [Alpha ][ 0.753168] . ( 142 sec) [ -18059.9715] [Topology ] . ( 145 sec) [ -18059.9673] [Topology ] . ( 149 sec) [ -18059.9651] [Topology ] . ( 152 sec) [ -18059.9639] [Topology ] . ( 155 sec) [ -18059.9633] [Topology ] . Checking for NNIs, optimizing five branches... . ( 180 sec) [ -18059.9627] [Alpha ][ 0.754490] . ( 180 sec) [ -18059.9627] [Topology ] . ( 183 sec) [ -18059.9621] [Topology ] . Checking for NNIs, optimizing five branches... . ( 208 sec) [ -18059.9621] [Alpha ][ 0.754490] . ( 209 sec) [ -18059.9621] [Topology ] . ( 212 sec) [ -18059.9617] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -18059.961750. . Printing the most likely tree in file 'proteic_M2479_30x627_2005.phy_phyml_tree.txt'... . Time used 0h4m22s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 261.42user 0.00system 4:22.56elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps